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CD-HIT: Sequence clustering software - Downloads

cd-hit 4.5.4 (tgz)

Release notes:

Add: support for FASTQ file as input;
MinorChange: default value of "-n" for DNA sequence from 8 to 10;
MinorFix: alignment locations and length;

Add: cd-hit-454 program to the main package (cdhit-454.c++);
Add: options to change the scoring settings;
Add: options to control the length of unmatched region.
Add: improvement to sequence partition for parallelization;
Change: default identity threshold from 0.9 to 0.95 for EST.



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