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    URL: BioWeka
    Submitted by Martin Szugat; posted on Tuesday, October 18, 2005 (1 comment)

    BioWeka is a Java-based extension to the Weka framework for data mining [1], and like Weka it is licensed under the GPL. It adds the following functionality to the Weka framework:
    • Loading FASTA, GenBank, EMBL and Swiss-Prot sequence files
    • Loading XML files, e.g. MAGE-ML, ProML and InterProScan result sets
    • Loading tab-delimited microarray data, e.g. TIGR, Stanford and Spot
    • Classification based on BLAST or PSI-BLAST
    • Classification based on alignments (local, global and secondary structure element)
    • Classification of DNA/RNA sequences based on Eclat [2]
    • Translation of sequences (DNA to RNA to Protein, DNA/RNA to its reverse complement)
    • Generation of the open reading frames of DNA/RNA sequences
    • Analysis of amino acid properties based on the Amino Acid Index database (AAindex)
    • Calculation of codon frequencies or amino acid composition
    • Normalization of numeric feature vectors
    • Additional Weka utilities: Merge ARFF files, save ARFF files in a sequence format and create filter pipelines
    Version 0.4 has just been released.

    Feedback is welcome! Send it to
    bioweka-users[at]lists.sourceforge.net.

    URL

    www.bioweka.org

    References:
    1. www.cs.waikato.ac.nz/ml/weka/
    2. mips.gsf.de/proj/est/index.jsp
    Discussion forums: URL: BioWeka

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    bioweka
    Submitted by sirisha; posted on Friday, February 04, 2011
    hai iam final year MCA student ... i want this project documentation for my acedemic purpose ...plz send me
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