|
|
Bioinformatics.org
|
![[?]](https://www.bioinformatics.org/images/icons/info.png)
|
|
Research
|
Online databases
Online analysis tools
Online education tools
|
|
Development
|
|
|
Forums
|
News & Commentary
Jobs Forum
(Career Center)
|
|
|
News & Commentary - Message forums
|
         
|
 |
|
URL: BioWeka
Submitted by Martin Szugat; posted on Tuesday, October 18, 2005 (1 comment)
BioWeka is a Java-based extension to the Weka framework for data mining [1], and like Weka it is licensed under the GPL. It adds the following functionality to the Weka framework:
- Loading FASTA, GenBank, EMBL and Swiss-Prot sequence files
- Loading XML files, e.g. MAGE-ML, ProML and InterProScan result sets
- Loading tab-delimited microarray data, e.g. TIGR, Stanford and Spot
- Classification based on BLAST or PSI-BLAST
- Classification based on alignments (local, global and secondary structure element)
- Classification of DNA/RNA sequences based on Eclat [2]
- Translation of sequences (DNA to RNA to Protein, DNA/RNA to its reverse complement)
- Generation of the open reading frames of DNA/RNA sequences
- Analysis of amino acid properties based on the Amino Acid Index database (AAindex)
- Calculation of codon frequencies or amino acid composition
- Normalization of numeric feature vectors
- Additional Weka utilities: Merge ARFF files, save ARFF files in a sequence format and create filter pipelines
Version 0.4 has just been released.
Feedback is welcome! Send it to
bioweka-users[at]lists.sourceforge.net.
|
|
Expanded view | Monitor forum | Save place
|
|
hai iam final year MCA student ... i want this project documentation for my acedemic purpose ...plz send me
|
|
|
Start a new thread:
You have to be to post a reply.
|
|
![[University of Birmingham]](https://www.bioinformatics.org/images/ack_banners/Birmingham-728x90.gif)
![[Patsnap]](https://www.bioinformatics.org/images/ack_banners/Patsnap-728x90.png)