Basic Information
Gene ID 170820 ; Check Expression Profles ; Check TFs & Targets Binding
Gene Name Prdm4
Full Name PR domain zinc finger protein 4
Organism Rattus norvegicus [10116]

Cross Reference
UniProt Q9QZP2 UniGene Rn.162921
PDB NULL OMIM NULL
KEGG rno:170820 UCSC RGD:619929

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING 10116.ENSRNOP00000006886

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
REFSEQ
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
ENSRNOP00000006886 Gene3D G3DSA:3.30.160.60 IPR013087 585 615 1.20e-06 Zinc finger C2H2-type/integrase DNA-binding domain
ENSRNOP00000006886 Gene3D G3DSA:3.30.160.60 IPR013087 616 637 1.60e-13 Zinc finger C2H2-type/integrase DNA-binding domain
ENSRNOP00000006886 Gene3D G3DSA:3.30.160.60 IPR013087 638 661 5.10e-13 Zinc finger C2H2-type/integrase DNA-binding domain
ENSRNOP00000006886 Gene3D G3DSA:3.30.160.60 IPR013087 662 689 6.90e-14 Zinc finger C2H2-type/integrase DNA-binding domain
ENSRNOP00000006886 Gene3D G3DSA:3.30.160.60 IPR013087 690 717 2.10e-10 Zinc finger C2H2-type/integrase DNA-binding domain
ENSRNOP00000006886 Gene3D G3DSA:3.30.160.60 IPR013087 718 746 1.40e-07 Zinc finger C2H2-type/integrase DNA-binding domain
ENSRNOP00000006886 Pfam PF00096 IPR007087 726 748 2.80e-03 Zinc finger, C2H2
ENSRNOP00000006886 PIRSF PIRSF037161 IPR017124 1 798 0.00e-00 PR-domain zinc finger protein PRDM4
ENSRNOP00000006886 ProSitePatterns PS00028 IPR007087 588 608 - Zinc finger, C2H2
ENSRNOP00000006886 ProSitePatterns PS00028 IPR007087 616 636 - Zinc finger, C2H2
ENSRNOP00000006886 ProSitePatterns PS00028 IPR007087 644 664 - Zinc finger, C2H2
ENSRNOP00000006886 ProSitePatterns PS00028 IPR007087 672 692 - Zinc finger, C2H2
ENSRNOP00000006886 ProSitePatterns PS00028 IPR007087 700 720 - Zinc finger, C2H2
ENSRNOP00000006886 ProSiteProfiles PS50157 IPR007087 586 613 0.00e-00 Zinc finger, C2H2
ENSRNOP00000006886 ProSiteProfiles PS50157 IPR007087 614 641 0.00e-00 Zinc finger, C2H2
ENSRNOP00000006886 ProSiteProfiles PS50157 IPR007087 642 669 0.00e-00 Zinc finger, C2H2
ENSRNOP00000006886 ProSiteProfiles PS50157 IPR007087 670 697 0.00e-00 Zinc finger, C2H2
ENSRNOP00000006886 ProSiteProfiles PS50157 IPR007087 698 725 0.00e-00 Zinc finger, C2H2
ENSRNOP00000006886 ProSiteProfiles PS50157 IPR007087 726 746 0.00e-00 Zinc finger, C2H2
ENSRNOP00000006886 ProSiteProfiles PS50280 IPR001214 408 525 0.00e-00 SET domain
ENSRNOP00000006886 SMART SM00317 IPR001214 408 531 1.80e-03 SET domain
ENSRNOP00000006886 SMART SM00355 IPR015880 541 562 2.60e-01 Zinc finger, C2H2-like
ENSRNOP00000006886 SMART SM00355 IPR015880 586 608 1.30e-03 Zinc finger, C2H2-like
ENSRNOP00000006886 SMART SM00355 IPR015880 614 636 7.50e-07 Zinc finger, C2H2-like
ENSRNOP00000006886 SMART SM00355 IPR015880 642 664 2.70e-07 Zinc finger, C2H2-like
ENSRNOP00000006886 SMART SM00355 IPR015880 670 692 1.20e-05 Zinc finger, C2H2-like
ENSRNOP00000006886 SMART SM00355 IPR015880 698 720 1.10e-04 Zinc finger, C2H2-like
ENSRNOP00000006886 SMART SM00355 IPR015880 726 746 6.20e-02 Zinc finger, C2H2-like

Pfam Annotation
Protein Pfam ID E.value Name Description
ENSRNOP00000006886 PF13465 1.2e-26 zf-H2C2_2 Zinc-finger double domain
ENSRNOP00000006886 PF00096 6.4e-22 zf-C2H2 Zinc finger, C2H2 type
ENSRNOP00000006886 PF13894 1.3e-15 zf-C2H2_4 C2H2-type zinc finger
ENSRNOP00000006886 PF12874 3.3e-08 zf-met Zinc-finger of C2H2 type
ENSRNOP00000006886 PF12171 3.8e-05 zf-C2H2_jaz Zinc-finger double-stranded RNA-binding

Gene Ontology Annotation
Protein Entry Name Space Description
ENSRNOP00000006886 GO:0006351 biological_process transcription, DNA-templated
ENSRNOP00000006886 GO:0006355 biological_process regulation of transcription, DNA-templated
ENSRNOP00000006886 GO:0005634 cellular_component nucleus
ENSRNOP00000006886 GO:0003677 molecular_function DNA binding
ENSRNOP00000006886 GO:0046872 molecular_function metal ion binding

Orthologs
TAXID Organism Gene ID TAXID Organism Gene ID
400682 Amphimedon queenslandica 100631787 10029 Cricetulus griseus 100762237
7668 Strongylocentrotus purpuratus 100891124 9597 Pan paniscus 100967318
9555 Papio anubis 101003895 39432 Saimiri boliviensis 101039712
9685 Felis catus 101089949 7897 Latimeria chalumnae 102361561
9544 Macaca mulatta 704529 8049 Gadus morhua ENSGMOG00000001979
9315 Macropus eugenii ENSMEUG00000004495 30608 Microcebus murinus ENSMICG00000007807
9978 Ochotona princeps ENSOPRG00000010192 37347 Tupaia belangeri ENSTBEG00000001732
9739 Tursiops truncatus ENSTTRG00000011056 9031 Gallus gallus 418065
28377 Anolis carolinensis ENSACAG00000014907 9646 Ailuropoda melanoleuca ENSAMEG00000016174
9913 Bos taurus ENSBTAG00000012999 9358 Choloepus hoffmanni ENSCHOG00000001744
10141 Cavia porcellus ENSCPOG00000022385 10020 Dipodomys ordii ENSDORG00000015081
9365 Erinaceus europaeus ENSEEUG00000006569 9371 Echinops telfairi ENSETEG00000008915
69293 Gasterosteus aculeatus ENSGACG00000018950 9595 Gorilla gorilla ENSGGOG00000001244
9785 Loxodonta africana ENSLAFG00000001483 9103 Meleagris gallopavo ENSMGAG00000012815
59463 Myotis lucifugus ENSMLUG00000000767 13616 Monodelphis domestica ENSMODG00000001448
9669 Mustela putorius furo ENSMPUG00000012238 30611 Otolemur garnettii ENSOGAG00000011945
8090 Oryzias latipes ENSORLG00000011007 9813 Procavia capensis ENSPCAG00000009987
7757 Petromyzon marinus ENSPMAG00000003609 13735 Pelodiscus sinensis ENSPSIG00000012066
9598 Pan troglodytes ENSPTRG00000005400 132908 Pteropus vampyrus ENSPVAG00000001596
42254 Sorex araneus ENSSARG00000013107 9823 Sus scrofa ENSSSCG00000000160
43179 Ictidomys tridecemlineatus ENSSTOG00000016168 59729 Taeniopygia guttata ENSTGUG00000010962
99883 Tetraodon nigroviridis ENSTNIG00000018531 31033 Takifugu rubripes ENSTRUG00000006971
9478 Tarsius syrichta ENSTSYG00000009248 30538 Vicugna pacos ENSVPAG00000002215
8364 Xenopus tropicalis ENSXETG00000011529 8083 Xiphophorus maculatus ENSXMAG00000004286