Basic Information | |||
Gene ID | 185534 | ||
Gene Name | sox-3; CELE_F40E10.2, F40E10.2 | ||
Full Name | Protein SOX-3 | ||
Organism | Caenorhabditis elegans [6239] |
Cross Reference | |||
UniProt | Q20201 | UniGene | Cel.1041 |
PDB | NULL | OMIM | NULL |
KEGG | cel:CELE_F40E10.2 | UCSC | F40E10.2 |
Protein Interactions | |
DIP | NULL |
IntAct | Q20201 |
MINT | NULL |
STRING | 6239.F40E10.2 |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
F40E10.2 | Gene3D | G3DSA:1.10.30.10 | IPR009071 | 46 | 126 | 1.30e-41 | High mobility group box domain |
F40E10.2 | Pfam | PF00505 | IPR009071 | 48 | 116 | 4.00e-27 | High mobility group box domain |
F40E10.2 | ProSiteProfiles | PS50118 | IPR009071 | 48 | 116 | 0.00e-00 | High mobility group box domain |
F40E10.2 | SMART | SM00398 | IPR009071 | 47 | 117 | 1.00e-30 | High mobility group box domain |
F40E10.2 | SUPERFAMILY | SSF47095 | IPR009071 | 44 | 120 | 0.00e-00 | High mobility group box domain |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
F40E10.2 | PF00505 | 1.6e-27 | HMG_box | HMG (high mobility group) box |
F40E10.2 | PF09011 | 8e-11 | HMG_box_2 | HMG-box domain |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
F40E10.2 | GO:0000122 | biological_process | negative regulation of transcription from RNA polymerase II promoter |
F40E10.2 | GO:0006351 | biological_process | transcription, DNA-templated |
F40E10.2 | GO:0045892 | biological_process | negative regulation of transcription, DNA-templated |
F40E10.2 | GO:0005634 | cellular_component | nucleus |
F40E10.2 | GO:0043565 | molecular_function | sequence-specific DNA binding |
Orthologs | |||||
TAXID | Organism | Gene ID | TAXID | Organism | Gene ID |
13616 | Monodelphis domestica | 100016847 | 7425 | Nasonia vitripennis | 100122865 |
7029 | Acyrthosiphon pisum | 100165687 | 6087 | Hydra magnipapillata | 100211256 |
10224 | Saccoglossus kowalevskii | 100303553 | 8090 | Oryzias latipes | 100304454 |
9601 | Pongo abelii | 100460230 | 61853 | Nomascus leucogenys | 100605885 |
400682 | Amphimedon queenslandica | 100632156 | 30195 | Bombus terrestris | 100647305 |
9785 | Loxodonta africana | 100666585 | 8128 | Oreochromis niloticus | 100695210 |
132113 | Bombus impatiens | 100745146 | 10029 | Cricetulus griseus | 100759815 |
7463 | Apis florea | 100872761 | 143995 | Megachile rotundata | 100879499 |
34638 | Metaseiulus occidentalis | 100898556 | 9597 | Pan paniscus | 100976706 |
39432 | Saimiri boliviensis | 101049079 | 31033 | Takifugu rubripes | 101077582 |
9685 | Felis catus | 101099001 | 9595 | Gorilla gorilla | 101141972 |
9669 | Mustela putorius furo | 101690298 | 8083 | Xiphophorus maculatus | 102222750 |
7897 | Latimeria chalumnae | 102348252 | 13735 | Pelodiscus sinensis | 102443720 |
30611 | Otolemur garnettii | 100963354 | 9555 | Papio anubis | 101015311 |
7227 | Drosophila melanogaster | 39567 | 7955 | Danio rerio | 557661 |
9913 | Bos taurus | 614121 | 9544 | Macaca mulatta | 716702 |
7719 | Ciona intestinalis | ENSCING00000006005 | 9483 | Callithrix jacchus | ENSCJAG00000003296 |
10141 | Cavia porcellus | ENSCPOG00000026272 | 9796 | Equus caballus | ENSECAG00000022037 |
9371 | Echinops telfairi | ENSETEG00000018576 | 30608 | Microcebus murinus | ENSMICG00000013774 |
9258 | Ornithorhynchus anatinus | ENSOANG00000004458 | 9978 | Ochotona princeps | ENSOPRG00000017106 |
132908 | Pteropus vampyrus | ENSPVAG00000007702 | 42254 | Sorex araneus | ENSSARG00000006102 |
10090 | Mus musculus | 20669 | 10116 | Rattus norvegicus | 300954 |
7668 | Strongylocentrotus purpuratus | 373201 | 9031 | Gallus gallus | 396105 |
8364 | Xenopus tropicalis | 407873 | 9598 | Pan troglodytes | 460869 |
9615 | Canis familiaris | 488092 | 7070 | Tribolium castaneum | 660601 |
9606 | Homo sapiens | 6657 | 7460 | Apis mellifera | 726150 |
28377 | Anolis carolinensis | ENSACAG00000002492 | 9646 | Ailuropoda melanoleuca | ENSAMEG00000010234 |
9358 | Choloepus hoffmanni | ENSCHOG00000012015 | 51511 | Ciona savignyi | ENSCSAVG00000009067 |
9361 | Dasypus novemcinctus | ENSDNOG00000023758 | 10020 | Dipodomys ordii | ENSDORG00000007481 |
9365 | Erinaceus europaeus | ENSEEUG00000013305 | 69293 | Gasterosteus aculeatus | ENSGACG00000004124 |
8049 | Gadus morhua | ENSGMOG00000000863 | 9315 | Macropus eugenii | ENSMEUG00000006246 |
9103 | Meleagris gallopavo | ENSMGAG00000006638 | 59463 | Myotis lucifugus | ENSMLUG00000013015 |
9986 | Oryctolagus cuniculus | ENSOCUG00000011135 | 9813 | Procavia capensis | ENSPCAG00000012490 |
7757 | Petromyzon marinus | ENSPMAG00000009737 | 9305 | Sarcophilus harrisii | ENSSHAG00000012781 |
9823 | Sus scrofa | ENSSSCG00000011656 | 43179 | Ictidomys tridecemlineatus | ENSSTOG00000025068 |
37347 | Tupaia belangeri | ENSTBEG00000007360 | 59729 | Taeniopygia guttata | ENSTGUG00000012987 |
99883 | Tetraodon nigroviridis | ENSTNIG00000006369 | 9739 | Tursiops truncatus | ENSTTRG00000004853 |
30538 | Vicugna pacos | ENSVPAG00000010334 |