Basic Information
Gene ID 311723 ; Check Expression Profles ; Check TFs & Targets Binding
Gene Name Sox18; rCG_38422
Full Name Protein Sox18
Organism Rattus norvegicus [10116]

Cross Reference
UniProt Q4V7E4 UniGene Rn.22446
PDB NULL OMIM NULL
KEGG rno:311723 UCSC RGD:1311718

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING 10116.ENSRNOP00000021790

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
ENSRNOP00000021790 Gene3D G3DSA:1.10.30.10 IPR009071 78 154 3.60e-32 High mobility group box domain
ENSRNOP00000021790 Pfam PF00505 IPR009071 79 147 3.40e-24 High mobility group box domain
ENSRNOP00000021790 Pfam PF12067 IPR021934 187 375 4.10e-58 Sox C-terminal transactivation domain
ENSRNOP00000021790 ProSiteProfiles PS50118 IPR009071 79 147 0.00e-00 High mobility group box domain
ENSRNOP00000021790 ProSiteProfiles PS51516 IPR021934 256 376 0.00e-00 Sox C-terminal transactivation domain
ENSRNOP00000021790 SMART SM00398 IPR009071 78 148 1.40e-29 High mobility group box domain
ENSRNOP00000021790 SUPERFAMILY SSF47095 IPR009071 73 151 0.00e-00 High mobility group box domain

Pfam Annotation
Protein Pfam ID E.value Name Description
ENSRNOP00000021790 PF12067 0 Sox_C_TAD Sox C-terminal transactivation domain
ENSRNOP00000021790 PF00505 2.2e-24 HMG_box HMG (high mobility group) box
ENSRNOP00000021790 PF09011 1.7e-09 HMG_box_2 HMG-box domain

Gene Ontology Annotation
Protein Entry Name Space Description
ENSRNOP00000021790 GO:0006351 biological_process transcription, DNA-templated
ENSRNOP00000021790 GO:0006355 biological_process regulation of transcription, DNA-templated
ENSRNOP00000021790 GO:0007275 biological_process multicellular organismal development
ENSRNOP00000021790 GO:0045944 biological_process positive regulation of transcription from RNA polymerase II promoter
ENSRNOP00000021790 GO:0005634 cellular_component nucleus
ENSRNOP00000021790 GO:0003677 molecular_function DNA binding
ENSRNOP00000021790 GO:0043565 molecular_function sequence-specific DNA binding

Orthologs
TAXID Organism Gene ID TAXID Organism Gene ID
9823 Sus scrofa 100155811 59729 Taeniopygia guttata 100224917
28377 Anolis carolinensis 100556585 10029 Cricetulus griseus 100767412
9555 Papio anubis 101002038 39432 Saimiri boliviensis 101043749
43179 Ictidomys tridecemlineatus 101973435 7897 Latimeria chalumnae 102347767
10090 Mus musculus 20672 10141 Cavia porcellus 100727175
9615 Canis familiaris 485984 9544 Macaca mulatta 694156
9606 Homo sapiens 83595 9913 Bos taurus ENSBTAG00000011662
7719 Ciona intestinalis ENSCING00000007173 9483 Callithrix jacchus ENSCJAG00000022379
51511 Ciona savignyi ENSCSAVG00000008188 10020 Dipodomys ordii ENSDORG00000008388
9371 Echinops telfairi ENSETEG00000001816 69293 Gasterosteus aculeatus ENSGACG00000010505
9315 Macropus eugenii ENSMEUG00000016410 9103 Meleagris gallopavo ENSMGAG00000006624
13616 Monodelphis domestica ENSMODG00000017052 61853 Nomascus leucogenys ENSNLEG00000010228
8128 Oreochromis niloticus ENSONIG00000015337 9978 Ochotona princeps ENSOPRG00000004437
9813 Procavia capensis ENSPCAG00000015663 13735 Pelodiscus sinensis ENSPSIG00000009637
9598 Pan troglodytes ENSPTRG00000030459 132908 Pteropus vampyrus ENSPVAG00000014320
9305 Sarcophilus harrisii ENSSHAG00000016686 9739 Tursiops truncatus ENSTTRG00000005878
8083 Xiphophorus maculatus ENSXMAG00000009334