Basic Information | |||
Gene ID | 311723 ; ![]() ![]() | ||
Gene Name | Sox18; rCG_38422 | ||
Full Name | Protein Sox18 | ||
Organism | Rattus norvegicus [10116] |
Cross Reference | |||
UniProt | Q4V7E4 | UniGene | Rn.22446 |
PDB | NULL | OMIM | NULL |
KEGG | rno:311723 | UCSC | RGD:1311718 |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | 10116.ENSRNOP00000021790 |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
ENSRNOP00000021790 | Gene3D | G3DSA:1.10.30.10 | IPR009071 | 78 | 154 | 3.60e-32 | High mobility group box domain |
ENSRNOP00000021790 | Pfam | PF00505 | IPR009071 | 79 | 147 | 3.40e-24 | High mobility group box domain |
ENSRNOP00000021790 | Pfam | PF12067 | IPR021934 | 187 | 375 | 4.10e-58 | Sox C-terminal transactivation domain |
ENSRNOP00000021790 | ProSiteProfiles | PS50118 | IPR009071 | 79 | 147 | 0.00e-00 | High mobility group box domain |
ENSRNOP00000021790 | ProSiteProfiles | PS51516 | IPR021934 | 256 | 376 | 0.00e-00 | Sox C-terminal transactivation domain |
ENSRNOP00000021790 | SMART | SM00398 | IPR009071 | 78 | 148 | 1.40e-29 | High mobility group box domain |
ENSRNOP00000021790 | SUPERFAMILY | SSF47095 | IPR009071 | 73 | 151 | 0.00e-00 | High mobility group box domain |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
ENSRNOP00000021790 | PF12067 | 0 | Sox_C_TAD | Sox C-terminal transactivation domain |
ENSRNOP00000021790 | PF00505 | 2.2e-24 | HMG_box | HMG (high mobility group) box |
ENSRNOP00000021790 | PF09011 | 1.7e-09 | HMG_box_2 | HMG-box domain |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
ENSRNOP00000021790 | GO:0006351 | biological_process | transcription, DNA-templated |
ENSRNOP00000021790 | GO:0006355 | biological_process | regulation of transcription, DNA-templated |
ENSRNOP00000021790 | GO:0007275 | biological_process | multicellular organismal development |
ENSRNOP00000021790 | GO:0045944 | biological_process | positive regulation of transcription from RNA polymerase II promoter |
ENSRNOP00000021790 | GO:0005634 | cellular_component | nucleus |
ENSRNOP00000021790 | GO:0003677 | molecular_function | DNA binding |
ENSRNOP00000021790 | GO:0043565 | molecular_function | sequence-specific DNA binding |
Orthologs | |||||
TAXID | Organism | Gene ID | TAXID | Organism | Gene ID |
9823 | Sus scrofa | 100155811 | 59729 | Taeniopygia guttata | 100224917 |
28377 | Anolis carolinensis | 100556585 | 10029 | Cricetulus griseus | 100767412 |
9555 | Papio anubis | 101002038 | 39432 | Saimiri boliviensis | 101043749 |
43179 | Ictidomys tridecemlineatus | 101973435 | 7897 | Latimeria chalumnae | 102347767 |
10090 | Mus musculus | 20672 | 10141 | Cavia porcellus | 100727175 |
9615 | Canis familiaris | 485984 | 9544 | Macaca mulatta | 694156 |
9606 | Homo sapiens | 83595 | 9913 | Bos taurus | ENSBTAG00000011662 |
7719 | Ciona intestinalis | ENSCING00000007173 | 9483 | Callithrix jacchus | ENSCJAG00000022379 |
51511 | Ciona savignyi | ENSCSAVG00000008188 | 10020 | Dipodomys ordii | ENSDORG00000008388 |
9371 | Echinops telfairi | ENSETEG00000001816 | 69293 | Gasterosteus aculeatus | ENSGACG00000010505 |
9315 | Macropus eugenii | ENSMEUG00000016410 | 9103 | Meleagris gallopavo | ENSMGAG00000006624 |
13616 | Monodelphis domestica | ENSMODG00000017052 | 61853 | Nomascus leucogenys | ENSNLEG00000010228 |
8128 | Oreochromis niloticus | ENSONIG00000015337 | 9978 | Ochotona princeps | ENSOPRG00000004437 |
9813 | Procavia capensis | ENSPCAG00000015663 | 13735 | Pelodiscus sinensis | ENSPSIG00000009637 |
9598 | Pan troglodytes | ENSPTRG00000030459 | 132908 | Pteropus vampyrus | ENSPVAG00000014320 |
9305 | Sarcophilus harrisii | ENSSHAG00000016686 | 9739 | Tursiops truncatus | ENSTTRG00000005878 |
8083 | Xiphophorus maculatus | ENSXMAG00000009334 |