Basic Information
Gene ID 31813
Gene Name Lim1; CG11354, Dmel_CG11354
Full Name Lim1, isoform B
Organism Drosophila melanogaster [7227]

Cross Reference
UniProt M9PJE4 UniGene Dm.3025
PDB NULL OMIM NULL
KEGG dme:Dmel_CG11354 UCSC NULL

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING NULL

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
REFSEQ
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
FBpp0071216 Gene3D G3DSA:1.10.10.60 IPR009057 231 304 1.70e-23 Homeodomain-like
FBpp0071216 Gene3D G3DSA:2.10.110.10 IPR001781 25 88 7.30e-17 Zinc finger, LIM-type
FBpp0071216 Gene3D G3DSA:2.10.110.10 IPR001781 89 141 1.40e-13 Zinc finger, LIM-type
FBpp0071216 Pfam PF00046 IPR001356 248 304 1.80e-19 Homeobox domain
FBpp0071216 Pfam PF00412 IPR001781 27 81 2.50e-15 Zinc finger, LIM-type
FBpp0071216 Pfam PF00412 IPR001781 86 142 9.00e-16 Zinc finger, LIM-type
FBpp0071216 ProSitePatterns PS00027 IPR017970 280 303 - Homeobox, conserved site
FBpp0071216 ProSitePatterns PS00478 IPR001781 27 61 - Zinc finger, LIM-type
FBpp0071216 ProSitePatterns PS00478 IPR001781 86 121 - Zinc finger, LIM-type
FBpp0071216 ProSiteProfiles PS50023 IPR001781 25 84 0.00e-00 Zinc finger, LIM-type
FBpp0071216 ProSiteProfiles PS50023 IPR001781 85 147 0.00e-00 Zinc finger, LIM-type
FBpp0071216 ProSiteProfiles PS50071 IPR001356 245 305 0.00e-00 Homeobox domain
FBpp0071216 SMART SM00132 IPR001781 26 77 1.30e-19 Zinc finger, LIM-type
FBpp0071216 SMART SM00132 IPR001781 85 140 1.30e-18 Zinc finger, LIM-type
FBpp0071216 SMART SM00389 IPR001356 247 309 3.00e-24 Homeobox domain
FBpp0071216 SUPERFAMILY SSF46689 IPR009057 241 310 0.00e-00 Homeodomain-like

Pfam Annotation
Protein Pfam ID E.value Name Description
FBpp0071216 PF00412 1.5e-31 LIM LIM domain
FBpp0071216 PF00046 9.4e-20 Homeobox Homeobox domain
FBpp0071216 PF05920 1.6e-05 Homeobox_KN Homeobox KN domain

Gene Ontology Annotation
Protein Entry Name Space Description
FBpp0071216 GO:0001655 biological_process urogenital system development
FBpp0071216 GO:0001657 biological_process ureteric bud development
FBpp0071216 GO:0001702 biological_process gastrulation with mouth forming second
FBpp0071216 GO:0001705 biological_process ectoderm formation
FBpp0071216 GO:0001706 biological_process endoderm formation
FBpp0071216 GO:0001822 biological_process kidney development
FBpp0071216 GO:0006351 biological_process transcription, DNA-templated
FBpp0071216 GO:0006366 biological_process transcription from RNA polymerase II promoter
FBpp0071216 GO:0007267 biological_process cell-cell signaling
FBpp0071216 GO:0007389 biological_process pattern specification process
FBpp0071216 GO:0007399 biological_process nervous system development
FBpp0071216 GO:0008045 biological_process motor neuron axon guidance
FBpp0071216 GO:0009653 biological_process anatomical structure morphogenesis
FBpp0071216 GO:0009791 biological_process post-embryonic development
FBpp0071216 GO:0009880 biological_process embryonic pattern specification
FBpp0071216 GO:0009948 biological_process anterior/posterior axis specification
FBpp0071216 GO:0009952 biological_process anterior/posterior pattern specification
FBpp0071216 GO:0009953 biological_process dorsal/ventral pattern formation
FBpp0071216 GO:0010468 biological_process regulation of gene expression
FBpp0071216 GO:0010842 biological_process retina layer formation
FBpp0071216 GO:0021527 biological_process spinal cord association neuron differentiation
FBpp0071216 GO:0021549 biological_process cerebellum development
FBpp0071216 GO:0021702 biological_process cerebellar Purkinje cell differentiation
FBpp0071216 GO:0021871 biological_process forebrain regionalization
FBpp0071216 GO:0021937 biological_process cerebellar Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation
FBpp0071216 GO:0035846 biological_process oviduct epithelium development
FBpp0071216 GO:0035847 biological_process uterine epithelium development
FBpp0071216 GO:0040019 biological_process positive regulation of embryonic development
FBpp0071216 GO:0045892 biological_process negative regulation of transcription, DNA-templated
FBpp0071216 GO:0045893 biological_process positive regulation of transcription, DNA-templated
FBpp0071216 GO:0048646 biological_process anatomical structure formation involved in morphogenesis
FBpp0071216 GO:0048703 biological_process embryonic viscerocranium morphogenesis
FBpp0071216 GO:0060059 biological_process embryonic retina morphogenesis in camera-type eye
FBpp0071216 GO:0060067 biological_process cervix development
FBpp0071216 GO:0060068 biological_process vagina development
FBpp0071216 GO:0060322 biological_process head development
FBpp0071216 GO:0060429 biological_process epithelium development
FBpp0071216 GO:0061205 biological_process paramesonephric duct development
FBpp0071216 GO:0072049 biological_process comma-shaped body morphogenesis
FBpp0071216 GO:0072050 biological_process S-shaped body morphogenesis
FBpp0071216 GO:0072077 biological_process renal vesicle morphogenesis
FBpp0071216 GO:0072178 biological_process nephric duct morphogenesis
FBpp0071216 GO:0090009 biological_process primitive streak formation
FBpp0071216 GO:0090190 biological_process positive regulation of branching involved in ureteric bud morphogenesis
FBpp0071216 GO:0097477 biological_process lateral motor column neuron migration
FBpp0071216 GO:2000543 biological_process positive regulation of gastrulation
FBpp0071216 GO:2000744 biological_process positive regulation of anterior head development
FBpp0071216 GO:2000768 biological_process positive regulation of nephron tubule epithelial cell differentiation
FBpp0071216 GO:0005634 cellular_component nucleus
FBpp0071216 GO:0043234 cellular_component protein complex
FBpp0071216 GO:0003700 molecular_function sequence-specific DNA binding transcription factor activity
FBpp0071216 GO:0003714 molecular_function transcription corepressor activity
FBpp0071216 GO:0008270 molecular_function zinc ion binding
FBpp0071216 GO:0043565 molecular_function sequence-specific DNA binding

Orthologs
TAXID Organism Gene ID TAXID Organism Gene ID
13616 Monodelphis domestica 100028420 7425 Nasonia vitripennis 100116733
7029 Acyrthosiphon pisum 100158984 10224 Saccoglossus kowalevskii 100366515
9483 Callithrix jacchus 100392549 9601 Pongo abelii 100451412
9785 Loxodonta africana 100675956 143995 Megachile rotundata 100882468
34638 Metaseiulus occidentalis 100904816 9305 Sarcophilus harrisii 100931234
30611 Otolemur garnettii 100951554 9597 Pan paniscus 100988029
9555 Papio anubis 101008593 8083 Xiphophorus maculatus 102218401
6239 Caenorhabditis elegans 172893 7955 Danio rerio 30465
9823 Sus scrofa 100513681 400682 Amphimedon queenslandica 100633432
30195 Bombus terrestris 100644955 132113 Bombus impatiens 100741244
10029 Cricetulus griseus 100758453 9615 Canis familiaris 100856649
39432 Saimiri boliviensis 101033157 31033 Takifugu rubripes 101061689
9685 Felis catus 101083467 9595 Gorilla gorilla 101135759
8090 Oryzias latipes 101166400 9669 Mustela putorius furo 101687390
43179 Ictidomys tridecemlineatus 101973608 7897 Latimeria chalumnae 102362985
59463 Myotis lucifugus 102440821 13735 Pelodiscus sinensis 102453882
10116 Rattus norvegicus 257634 7668 Strongylocentrotus purpuratus 373522
8364 Xenopus tropicalis 548836 9606 Homo sapiens 64211
7070 Tribolium castaneum 657972 9913 Bos taurus 786041
7719 Ciona intestinalis ENSCING00000019733 9365 Erinaceus europaeus ENSEEUG00000002834
9371 Echinops telfairi ENSETEG00000003513 61853 Nomascus leucogenys ENSNLEG00000002343
9986 Oryctolagus cuniculus ENSOCUG00000024664 9978 Ochotona princeps ENSOPRG00000004641
9813 Procavia capensis ENSPCAG00000010694 37347 Tupaia belangeri ENSTBEG00000007734
59729 Taeniopygia guttata ENSTGUG00000008052 9739 Tursiops truncatus ENSTTRG00000008900
28377 Anolis carolinensis ENSACAG00000005037 9646 Ailuropoda melanoleuca ENSAMEG00000008305
9358 Choloepus hoffmanni ENSCHOG00000007567 10141 Cavia porcellus ENSCPOG00000023977
51511 Ciona savignyi ENSCSAVG00000004922 9361 Dasypus novemcinctus ENSDNOG00000010448
10020 Dipodomys ordii ENSDORG00000006956 9796 Equus caballus ENSECAG00000016915
69293 Gasterosteus aculeatus ENSGACG00000013605 9031 Gallus gallus ENSGALG00000005409
8049 Gadus morhua ENSGMOG00000002984 9315 Macropus eugenii ENSMEUG00000006658
9103 Meleagris gallopavo ENSMGAG00000007924 9544 Macaca mulatta ENSMMUG00000021668
9258 Ornithorhynchus anatinus ENSOANG00000014248 7757 Petromyzon marinus ENSPMAG00000008904
9598 Pan troglodytes ENSPTRG00000009050 132908 Pteropus vampyrus ENSPVAG00000015637
42254 Sorex araneus ENSSARG00000010593 99883 Tetraodon nigroviridis ENSTNIG00000014399