Basic Information | |||
Gene ID | 30465 | ||
Gene Name | lhx5; lim5 | ||
Full Name | LIM/homeobox protein Lhx5 | ||
Organism | Danio rerio [7955] |
Cross Reference | |||
UniProt | P52889 | UniGene | Dr.75068 |
PDB | NULL | OMIM | NULL |
KEGG | dre:30465 | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | 7955.ENSDARP00000075139 |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
ENSDARP00000075139 | Gene3D | G3DSA:1.10.10.60 | IPR009057 | 183 | 240 | 3.60e-23 | Homeodomain-like |
ENSDARP00000075139 | Gene3D | G3DSA:2.10.110.10 | IPR001781 | 3 | 66 | 7.80e-17 | Zinc finger, LIM-type |
ENSDARP00000075139 | Gene3D | G3DSA:2.10.110.10 | IPR001781 | 67 | 120 | 1.50e-14 | Zinc finger, LIM-type |
ENSDARP00000075139 | Pfam | PF00046 | IPR001356 | 181 | 237 | 3.50e-19 | Homeobox domain |
ENSDARP00000075139 | Pfam | PF00412 | IPR001781 | 5 | 60 | 4.10e-15 | Zinc finger, LIM-type |
ENSDARP00000075139 | Pfam | PF00412 | IPR001781 | 64 | 121 | 3.70e-17 | Zinc finger, LIM-type |
ENSDARP00000075139 | ProSitePatterns | PS00027 | IPR017970 | 213 | 236 | - | Homeobox, conserved site |
ENSDARP00000075139 | ProSitePatterns | PS00478 | IPR001781 | 5 | 39 | - | Zinc finger, LIM-type |
ENSDARP00000075139 | ProSitePatterns | PS00478 | IPR001781 | 64 | 99 | - | Zinc finger, LIM-type |
ENSDARP00000075139 | ProSiteProfiles | PS50023 | IPR001781 | 3 | 62 | 0.00e-00 | Zinc finger, LIM-type |
ENSDARP00000075139 | ProSiteProfiles | PS50023 | IPR001781 | 63 | 125 | 0.00e-00 | Zinc finger, LIM-type |
ENSDARP00000075139 | ProSiteProfiles | PS50071 | IPR001356 | 178 | 238 | 0.00e-00 | Homeobox domain |
ENSDARP00000075139 | SMART | SM00132 | IPR001781 | 4 | 55 | 2.40e-18 | Zinc finger, LIM-type |
ENSDARP00000075139 | SMART | SM00132 | IPR001781 | 63 | 118 | 6.00e-20 | Zinc finger, LIM-type |
ENSDARP00000075139 | SMART | SM00389 | IPR001356 | 180 | 242 | 2.60e-24 | Homeobox domain |
ENSDARP00000075139 | SUPERFAMILY | SSF46689 | IPR009057 | 163 | 239 | 0.00e-00 | Homeodomain-like |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
ENSDARP00000075139 | PF00412 | 7.7e-33 | LIM | LIM domain |
ENSDARP00000075139 | PF00046 | 1.5e-19 | Homeobox | Homeobox domain |
ENSDARP00000075139 | PF05920 | 1.5e-05 | Homeobox_KN | Homeobox KN domain |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
ENSDARP00000075139 | GO:0005634 | cellular_component | nucleus |
ENSDARP00000075139 | GO:0003700 | molecular_function | sequence-specific DNA binding transcription factor activity |
ENSDARP00000075139 | GO:0008270 | molecular_function | zinc ion binding |
ENSDARP00000075139 | GO:0043565 | molecular_function | sequence-specific DNA binding |
Orthologs | |||||
TAXID | Organism | Gene ID | TAXID | Organism | Gene ID |
7425 | Nasonia vitripennis | 100116733 | 9601 | Pongo abelii | 100451412 |
34638 | Metaseiulus occidentalis | 100904816 | 9305 | Sarcophilus harrisii | 100931234 |
30611 | Otolemur garnettii | 100951554 | 9597 | Pan paniscus | 100988571 |
39432 | Saimiri boliviensis | 101029480 | 43179 | Ictidomys tridecemlineatus | 101963559 |
8083 | Xiphophorus maculatus | 102218401 | 7897 | Latimeria chalumnae | 102363675 |
6239 | Caenorhabditis elegans | 172893 | 13616 | Monodelphis domestica | 100028420 |
7029 | Acyrthosiphon pisum | 100158984 | 9986 | Oryctolagus cuniculus | 100356586 |
9483 | Callithrix jacchus | 100395248 | 30195 | Bombus terrestris | 100644955 |
9785 | Loxodonta africana | 100657099 | 132113 | Bombus impatiens | 100741244 |
10029 | Cricetulus griseus | 100768655 | 9615 | Canis familiaris | 100856649 |
9555 | Papio anubis | 101016716 | 9685 | Felis catus | 101083467 |
9595 | Gorilla gorilla | 101135725 | 8090 | Oryzias latipes | 101166400 |
9669 | Mustela putorius furo | 101685089 | 59463 | Myotis lucifugus | 102440821 |
10116 | Rattus norvegicus | 257634 | 7227 | Drosophila melanogaster | 31813 |
7668 | Strongylocentrotus purpuratus | 373522 | 8364 | Xenopus tropicalis | 548836 |
9606 | Homo sapiens | 64211 | 7070 | Tribolium castaneum | 657972 |
9913 | Bos taurus | 786041 | 9361 | Dasypus novemcinctus | ENSDNOG00000010448 |
9365 | Erinaceus europaeus | ENSEEUG00000002834 | 9371 | Echinops telfairi | ENSETEG00000003513 |
9031 | Gallus gallus | ENSGALG00000005409 | 8049 | Gadus morhua | ENSGMOG00000014888 |
30608 | Microcebus murinus | ENSMICG00000006473 | 61853 | Nomascus leucogenys | ENSNLEG00000002343 |
9258 | Ornithorhynchus anatinus | ENSOANG00000014248 | 9978 | Ochotona princeps | ENSOPRG00000009362 |
9813 | Procavia capensis | ENSPCAG00000010694 | 13735 | Pelodiscus sinensis | ENSPSIG00000005953 |
37347 | Tupaia belangeri | ENSTBEG00000003770 | 59729 | Taeniopygia guttata | ENSTGUG00000008052 |
99883 | Tetraodon nigroviridis | ENSTNIG00000013489 | 9739 | Tursiops truncatus | ENSTTRG00000008900 |
9544 | Macaca mulatta | 713417 | 28377 | Anolis carolinensis | ENSACAG00000005037 |
9646 | Ailuropoda melanoleuca | ENSAMEG00000008592 | 9358 | Choloepus hoffmanni | ENSCHOG00000007567 |
10141 | Cavia porcellus | ENSCPOG00000023977 | 10020 | Dipodomys ordii | ENSDORG00000006956 |
9796 | Equus caballus | ENSECAG00000016915 | 69293 | Gasterosteus aculeatus | ENSGACG00000013605 |
9315 | Macropus eugenii | ENSMEUG00000006658 | 9103 | Meleagris gallopavo | ENSMGAG00000007924 |
7757 | Petromyzon marinus | ENSPMAG00000008904 | 9598 | Pan troglodytes | ENSPTRG00000009050 |
132908 | Pteropus vampyrus | ENSPVAG00000015637 | 42254 | Sorex araneus | ENSSARG00000010593 |
9823 | Sus scrofa | ENSSSCG00000009869 | 31033 | Takifugu rubripes | ENSTRUG00000018387 |