Basic Information
Gene ID 548836
Gene Name lhx5; TGas054k10.1-001
Full Name LIM homeobox 5
Organism Xenopus tropicalis [8364]

Cross Reference
UniProt Q28F23 UniGene Str.14655
PDB NULL OMIM NULL
KEGG xtr:548836 UCSC NULL

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING 8364.ENSXETP00000038344

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
ENSXETP00000038344 Gene3D G3DSA:1.10.10.60 IPR009057 183 240 1.40e-23 Homeodomain-like
ENSXETP00000038344 Gene3D G3DSA:2.10.110.10 IPR001781 3 66 3.00e-16 Zinc finger, LIM-type
ENSXETP00000038344 Gene3D G3DSA:2.10.110.10 IPR001781 67 120 3.00e-15 Zinc finger, LIM-type
ENSXETP00000038344 Pfam PF00046 IPR001356 181 237 1.10e-19 Homeobox domain
ENSXETP00000038344 Pfam PF00412 IPR001781 5 60 2.00e-15 Zinc finger, LIM-type
ENSXETP00000038344 Pfam PF00412 IPR001781 64 121 2.10e-17 Zinc finger, LIM-type
ENSXETP00000038344 ProSitePatterns PS00027 IPR017970 213 236 - Homeobox, conserved site
ENSXETP00000038344 ProSitePatterns PS00478 IPR001781 5 39 - Zinc finger, LIM-type
ENSXETP00000038344 ProSitePatterns PS00478 IPR001781 64 99 - Zinc finger, LIM-type
ENSXETP00000038344 ProSiteProfiles PS50023 IPR001781 3 62 0.00e-00 Zinc finger, LIM-type
ENSXETP00000038344 ProSiteProfiles PS50023 IPR001781 63 125 0.00e-00 Zinc finger, LIM-type
ENSXETP00000038344 ProSiteProfiles PS50071 IPR001356 178 238 0.00e-00 Homeobox domain
ENSXETP00000038344 SMART SM00132 IPR001781 4 55 8.30e-19 Zinc finger, LIM-type
ENSXETP00000038344 SMART SM00132 IPR001781 63 118 7.40e-21 Zinc finger, LIM-type
ENSXETP00000038344 SMART SM00389 IPR001356 180 242 5.40e-25 Homeobox domain
ENSXETP00000038344 SUPERFAMILY SSF46689 IPR009057 165 239 0.00e-00 Homeodomain-like

Pfam Annotation
Protein Pfam ID E.value Name Description
ENSXETP00000038344 PF00412 2.3e-33 LIM LIM domain
ENSXETP00000038344 PF00046 5.8e-20 Homeobox Homeobox domain
ENSXETP00000038344 PF05920 1.9e-05 Homeobox_KN Homeobox KN domain

Gene Ontology Annotation
Protein Entry Name Space Description
ENSXETP00000038344 GO:0005634 cellular_component nucleus
ENSXETP00000038344 GO:0003700 molecular_function sequence-specific DNA binding transcription factor activity
ENSXETP00000038344 GO:0008270 molecular_function zinc ion binding
ENSXETP00000038344 GO:0043565 molecular_function sequence-specific DNA binding

Orthologs
TAXID Organism Gene ID TAXID Organism Gene ID
13616 Monodelphis domestica 100028420 7425 Nasonia vitripennis 100116733
7029 Acyrthosiphon pisum 100158984 9986 Oryctolagus cuniculus 100356586
9483 Callithrix jacchus 100395248 9601 Pongo abelii 100451412
30195 Bombus terrestris 100644955 9785 Loxodonta africana 100657099
132113 Bombus impatiens 100741244 10029 Cricetulus griseus 100768655
34638 Metaseiulus occidentalis 100904816 9305 Sarcophilus harrisii 100931234
30611 Otolemur garnettii 100951554 9597 Pan paniscus 100988571
9555 Papio anubis 101016716 39432 Saimiri boliviensis 101029480
9685 Felis catus 101083467 9595 Gorilla gorilla 101135725
9669 Mustela putorius furo 101685089 43179 Ictidomys tridecemlineatus 101963559
8083 Xiphophorus maculatus 102218401 7897 Latimeria chalumnae 102363675
59463 Myotis lucifugus 102440821 6239 Caenorhabditis elegans 172893
10116 Rattus norvegicus 257634 7955 Danio rerio 30465
7227 Drosophila melanogaster 31813 9615 Canis familiaris 100856649
8090 Oryzias latipes 101166400 7668 Strongylocentrotus purpuratus 373522
7070 Tribolium castaneum 657972 9371 Echinops telfairi ENSETEG00000003513
61853 Nomascus leucogenys ENSNLEG00000002343 9606 Homo sapiens 64211
9544 Macaca mulatta 713417 9913 Bos taurus 786041
28377 Anolis carolinensis ENSACAG00000005037 9646 Ailuropoda melanoleuca ENSAMEG00000008592
9358 Choloepus hoffmanni ENSCHOG00000007567 10141 Cavia porcellus ENSCPOG00000023977
9361 Dasypus novemcinctus ENSDNOG00000010448 10020 Dipodomys ordii ENSDORG00000006956
9796 Equus caballus ENSECAG00000016915 9365 Erinaceus europaeus ENSEEUG00000002834
69293 Gasterosteus aculeatus ENSGACG00000013605 9031 Gallus gallus ENSGALG00000005409
8049 Gadus morhua ENSGMOG00000002984 9315 Macropus eugenii ENSMEUG00000006658
9103 Meleagris gallopavo ENSMGAG00000007924 30608 Microcebus murinus ENSMICG00000006473
9258 Ornithorhynchus anatinus ENSOANG00000014248 9978 Ochotona princeps ENSOPRG00000009362
9813 Procavia capensis ENSPCAG00000010694 7757 Petromyzon marinus ENSPMAG00000008904
13735 Pelodiscus sinensis ENSPSIG00000005953 9598 Pan troglodytes ENSPTRG00000009050
132908 Pteropus vampyrus ENSPVAG00000015637 42254 Sorex araneus ENSSARG00000010593
9823 Sus scrofa ENSSSCG00000009869 37347 Tupaia belangeri ENSTBEG00000003770
59729 Taeniopygia guttata ENSTGUG00000008052 99883 Tetraodon nigroviridis ENSTNIG00000013489
31033 Takifugu rubripes ENSTRUG00000018387 9739 Tursiops truncatus ENSTTRG00000008900