Basic Information | |||
Gene ID | 548836 | ||
Gene Name | lhx5; TGas054k10.1-001 | ||
Full Name | LIM homeobox 5 | ||
Organism | Xenopus tropicalis [8364] |
Cross Reference | |||
UniProt | Q28F23 | UniGene | Str.14655 |
PDB | NULL | OMIM | NULL |
KEGG | xtr:548836 | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | 8364.ENSXETP00000038344 |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
ENSXETP00000038344 | Gene3D | G3DSA:1.10.10.60 | IPR009057 | 183 | 240 | 1.40e-23 | Homeodomain-like |
ENSXETP00000038344 | Gene3D | G3DSA:2.10.110.10 | IPR001781 | 3 | 66 | 3.00e-16 | Zinc finger, LIM-type |
ENSXETP00000038344 | Gene3D | G3DSA:2.10.110.10 | IPR001781 | 67 | 120 | 3.00e-15 | Zinc finger, LIM-type |
ENSXETP00000038344 | Pfam | PF00046 | IPR001356 | 181 | 237 | 1.10e-19 | Homeobox domain |
ENSXETP00000038344 | Pfam | PF00412 | IPR001781 | 5 | 60 | 2.00e-15 | Zinc finger, LIM-type |
ENSXETP00000038344 | Pfam | PF00412 | IPR001781 | 64 | 121 | 2.10e-17 | Zinc finger, LIM-type |
ENSXETP00000038344 | ProSitePatterns | PS00027 | IPR017970 | 213 | 236 | - | Homeobox, conserved site |
ENSXETP00000038344 | ProSitePatterns | PS00478 | IPR001781 | 5 | 39 | - | Zinc finger, LIM-type |
ENSXETP00000038344 | ProSitePatterns | PS00478 | IPR001781 | 64 | 99 | - | Zinc finger, LIM-type |
ENSXETP00000038344 | ProSiteProfiles | PS50023 | IPR001781 | 3 | 62 | 0.00e-00 | Zinc finger, LIM-type |
ENSXETP00000038344 | ProSiteProfiles | PS50023 | IPR001781 | 63 | 125 | 0.00e-00 | Zinc finger, LIM-type |
ENSXETP00000038344 | ProSiteProfiles | PS50071 | IPR001356 | 178 | 238 | 0.00e-00 | Homeobox domain |
ENSXETP00000038344 | SMART | SM00132 | IPR001781 | 4 | 55 | 8.30e-19 | Zinc finger, LIM-type |
ENSXETP00000038344 | SMART | SM00132 | IPR001781 | 63 | 118 | 7.40e-21 | Zinc finger, LIM-type |
ENSXETP00000038344 | SMART | SM00389 | IPR001356 | 180 | 242 | 5.40e-25 | Homeobox domain |
ENSXETP00000038344 | SUPERFAMILY | SSF46689 | IPR009057 | 165 | 239 | 0.00e-00 | Homeodomain-like |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
ENSXETP00000038344 | PF00412 | 2.3e-33 | LIM | LIM domain |
ENSXETP00000038344 | PF00046 | 5.8e-20 | Homeobox | Homeobox domain |
ENSXETP00000038344 | PF05920 | 1.9e-05 | Homeobox_KN | Homeobox KN domain |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
ENSXETP00000038344 | GO:0005634 | cellular_component | nucleus |
ENSXETP00000038344 | GO:0003700 | molecular_function | sequence-specific DNA binding transcription factor activity |
ENSXETP00000038344 | GO:0008270 | molecular_function | zinc ion binding |
ENSXETP00000038344 | GO:0043565 | molecular_function | sequence-specific DNA binding |
Orthologs | |||||
TAXID | Organism | Gene ID | TAXID | Organism | Gene ID |
13616 | Monodelphis domestica | 100028420 | 7425 | Nasonia vitripennis | 100116733 |
7029 | Acyrthosiphon pisum | 100158984 | 9986 | Oryctolagus cuniculus | 100356586 |
9483 | Callithrix jacchus | 100395248 | 9601 | Pongo abelii | 100451412 |
30195 | Bombus terrestris | 100644955 | 9785 | Loxodonta africana | 100657099 |
132113 | Bombus impatiens | 100741244 | 10029 | Cricetulus griseus | 100768655 |
34638 | Metaseiulus occidentalis | 100904816 | 9305 | Sarcophilus harrisii | 100931234 |
30611 | Otolemur garnettii | 100951554 | 9597 | Pan paniscus | 100988571 |
9555 | Papio anubis | 101016716 | 39432 | Saimiri boliviensis | 101029480 |
9685 | Felis catus | 101083467 | 9595 | Gorilla gorilla | 101135725 |
9669 | Mustela putorius furo | 101685089 | 43179 | Ictidomys tridecemlineatus | 101963559 |
8083 | Xiphophorus maculatus | 102218401 | 7897 | Latimeria chalumnae | 102363675 |
59463 | Myotis lucifugus | 102440821 | 6239 | Caenorhabditis elegans | 172893 |
10116 | Rattus norvegicus | 257634 | 7955 | Danio rerio | 30465 |
7227 | Drosophila melanogaster | 31813 | 9615 | Canis familiaris | 100856649 |
8090 | Oryzias latipes | 101166400 | 7668 | Strongylocentrotus purpuratus | 373522 |
7070 | Tribolium castaneum | 657972 | 9371 | Echinops telfairi | ENSETEG00000003513 |
61853 | Nomascus leucogenys | ENSNLEG00000002343 | 9606 | Homo sapiens | 64211 |
9544 | Macaca mulatta | 713417 | 9913 | Bos taurus | 786041 |
28377 | Anolis carolinensis | ENSACAG00000005037 | 9646 | Ailuropoda melanoleuca | ENSAMEG00000008592 |
9358 | Choloepus hoffmanni | ENSCHOG00000007567 | 10141 | Cavia porcellus | ENSCPOG00000023977 |
9361 | Dasypus novemcinctus | ENSDNOG00000010448 | 10020 | Dipodomys ordii | ENSDORG00000006956 |
9796 | Equus caballus | ENSECAG00000016915 | 9365 | Erinaceus europaeus | ENSEEUG00000002834 |
69293 | Gasterosteus aculeatus | ENSGACG00000013605 | 9031 | Gallus gallus | ENSGALG00000005409 |
8049 | Gadus morhua | ENSGMOG00000002984 | 9315 | Macropus eugenii | ENSMEUG00000006658 |
9103 | Meleagris gallopavo | ENSMGAG00000007924 | 30608 | Microcebus murinus | ENSMICG00000006473 |
9258 | Ornithorhynchus anatinus | ENSOANG00000014248 | 9978 | Ochotona princeps | ENSOPRG00000009362 |
9813 | Procavia capensis | ENSPCAG00000010694 | 7757 | Petromyzon marinus | ENSPMAG00000008904 |
13735 | Pelodiscus sinensis | ENSPSIG00000005953 | 9598 | Pan troglodytes | ENSPTRG00000009050 |
132908 | Pteropus vampyrus | ENSPVAG00000015637 | 42254 | Sorex araneus | ENSSARG00000010593 |
9823 | Sus scrofa | ENSSSCG00000009869 | 37347 | Tupaia belangeri | ENSTBEG00000003770 |
59729 | Taeniopygia guttata | ENSTGUG00000008052 | 99883 | Tetraodon nigroviridis | ENSTNIG00000013489 |
31033 | Takifugu rubripes | ENSTRUG00000018387 | 9739 | Tursiops truncatus | ENSTTRG00000008900 |