Basic Information | |||
Gene ID | 394834 | ||
Gene Name | hmgb1; TEgg067f14.1-001, TTpA012a14.1-001 | ||
Full Name | High-mobility group box 1 | ||
Organism | Xenopus tropicalis [8364] |
Cross Reference | |||
UniProt | Q6P4N5 | UniGene | Str.17460 |
PDB | NULL | OMIM | NULL |
KEGG | xtr:394834 | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | 8364.ENSXETP00000041556 |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
ENSXETP00000041556 | Gene3D | G3DSA:1.10.30.10 | IPR009071 | 8 | 78 | 2.40e-28 | High mobility group box domain |
ENSXETP00000041556 | Gene3D | G3DSA:1.10.30.10 | IPR009071 | 93 | 168 | 7.10e-30 | High mobility group box domain |
ENSXETP00000041556 | Pfam | PF00505 | IPR009071 | 95 | 163 | 8.40e-26 | High mobility group box domain |
ENSXETP00000041556 | Pfam | PF09011 | IPR009071 | 6 | 78 | 3.60e-27 | High mobility group box domain |
ENSXETP00000041556 | ProSitePatterns | PS00353 | IPR017967 | 41 | 52 | - | HMG box A DNA-binding domain, conserved site |
ENSXETP00000041556 | ProSiteProfiles | PS50118 | IPR009071 | 95 | 163 | 0.00e-00 | High mobility group box domain |
ENSXETP00000041556 | ProSiteProfiles | PS50118 | IPR009071 | 9 | 79 | 0.00e-00 | High mobility group box domain |
ENSXETP00000041556 | SMART | SM00398 | IPR009071 | 8 | 80 | 9.90e-28 | High mobility group box domain |
ENSXETP00000041556 | SMART | SM00398 | IPR009071 | 94 | 164 | 3.60e-32 | High mobility group box domain |
ENSXETP00000041556 | SUPERFAMILY | SSF47095 | IPR009071 | 3 | 81 | 0.00e-00 | High mobility group box domain |
ENSXETP00000041556 | SUPERFAMILY | SSF47095 | IPR009071 | 78 | 164 | 0.00e-00 | High mobility group box domain |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
ENSXETP00000041556 | PF09011 | 1.09301e-43 | HMG_box_2 | HMG-box domain |
ENSXETP00000041556 | PF00505 | 1.2e-40 | HMG_box | HMG (high mobility group) box |
ENSXETP00000041556 | PF14887 | 0.00024 | HMG_box_5 | HMG (high mobility group) box 5 |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
ENSXETP00000041556 | GO:0005634 | cellular_component | nucleus |
ENSXETP00000041556 | GO:0005694 | cellular_component | chromosome |
ENSXETP00000041556 | GO:0003677 | molecular_function | DNA binding |
Orthologs | |||||
TAXID | Organism | Gene ID | TAXID | Organism | Gene ID |
9796 | Equus caballus | 100033873 | 7425 | Nasonia vitripennis | 100122354 |
7029 | Acyrthosiphon pisum | 100167132 | 6087 | Hydra magnipapillata | 100204109 |
9646 | Ailuropoda melanoleuca | 100482413 | 9103 | Meleagris gallopavo | 100543659 |
61853 | Nomascus leucogenys | 100587901 | 400682 | Amphimedon queenslandica | 100635010 |
132113 | Bombus impatiens | 100749348 | 143995 | Megachile rotundata | 100876876 |
34638 | Metaseiulus occidentalis | 100907435 | 9597 | Pan paniscus | 100980430 |
9555 | Papio anubis | 101026485 | 39432 | Saimiri boliviensis | 101045330 |
31033 | Takifugu rubripes | 101074166 | 8090 | Oryzias latipes | 101165167 |
9669 | Mustela putorius furo | 101675666 | 8083 | Xiphophorus maculatus | 102238067 |
7897 | Latimeria chalumnae | 102366474 | 59463 | Myotis lucifugus | 102420405 |
13735 | Pelodiscus sinensis | 102454149 | 7227 | Drosophila melanogaster | 117294 |
10090 | Mus musculus | 15289 | 9913 | Bos taurus | 282691 |
9606 | Homo sapiens | 3146 | 7668 | Strongylocentrotus purpuratus | 373332 |
7463 | Apis florea | 100871828 | 7460 | Apis mellifera | 725551 |
69293 | Gasterosteus aculeatus | ENSGACG00000020545 | 42254 | Sorex araneus | ENSSARG00000004470 |
9823 | Sus scrofa | 445521 | 7070 | Tribolium castaneum | 662763 |
9544 | Macaca mulatta | 712849 | 9598 | Pan troglodytes | 736904 |
7719 | Ciona intestinalis | 778643 | 28377 | Anolis carolinensis | ENSACAG00000005092 |
9615 | Canis familiaris | ENSCAFG00000023930 | 9358 | Choloepus hoffmanni | ENSCHOG00000002423 |
9483 | Callithrix jacchus | ENSCJAG00000022832 | 10141 | Cavia porcellus | ENSCPOG00000003985 |
51511 | Ciona savignyi | ENSCSAVG00000000341 | 7955 | Danio rerio | ENSDARG00000029722 |
9361 | Dasypus novemcinctus | ENSDNOG00000019440 | 9365 | Erinaceus europaeus | ENSEEUG00000012238 |
9371 | Echinops telfairi | ENSETEG00000004048 | 9685 | Felis catus | ENSFCAG00000000200 |
9031 | Gallus gallus | ENSGALG00000010745 | 9595 | Gorilla gorilla | ENSGGOG00000025109 |
8049 | Gadus morhua | ENSGMOG00000019231 | 9785 | Loxodonta africana | ENSLAFG00000030388 |
9315 | Macropus eugenii | ENSMEUG00000001380 | 30608 | Microcebus murinus | ENSMICG00000006213 |
13616 | Monodelphis domestica | ENSMODG00000008785 | 9258 | Ornithorhynchus anatinus | ENSOANG00000014719 |
9986 | Oryctolagus cuniculus | ENSOCUG00000004133 | 30611 | Otolemur garnettii | ENSOGAG00000003205 |
8128 | Oreochromis niloticus | ENSONIG00000006737 | 9978 | Ochotona princeps | ENSOPRG00000003507 |
9813 | Procavia capensis | ENSPCAG00000002201 | 7757 | Petromyzon marinus | ENSPMAG00000007397 |
9601 | Pongo abelii | ENSPPYG00000011668 | 132908 | Pteropus vampyrus | ENSPVAG00000001431 |
10116 | Rattus norvegicus | ENSRNOG00000029654 | 9305 | Sarcophilus harrisii | ENSSHAG00000014034 |
43179 | Ictidomys tridecemlineatus | ENSSTOG00000000443 | 37347 | Tupaia belangeri | ENSTBEG00000014925 |
59729 | Taeniopygia guttata | ENSTGUG00000006267 | 99883 | Tetraodon nigroviridis | ENSTNIG00000016258 |
9478 | Tarsius syrichta | ENSTSYG00000012587 | 9739 | Tursiops truncatus | ENSTTRG00000010327 |
Paralogs | |||
448228 | ENSXETG00000016916 |