Basic Information
Gene ID 394834
Gene Name hmgb1; TEgg067f14.1-001, TTpA012a14.1-001
Full Name High-mobility group box 1
Organism Xenopus tropicalis [8364]

Cross Reference
UniProt Q6P4N5 UniGene Str.17460
PDB NULL OMIM NULL
KEGG xtr:394834 UCSC NULL

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING 8364.ENSXETP00000041556

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
ENSXETP00000041556 Gene3D G3DSA:1.10.30.10 IPR009071 8 78 2.40e-28 High mobility group box domain
ENSXETP00000041556 Gene3D G3DSA:1.10.30.10 IPR009071 93 168 7.10e-30 High mobility group box domain
ENSXETP00000041556 Pfam PF00505 IPR009071 95 163 8.40e-26 High mobility group box domain
ENSXETP00000041556 Pfam PF09011 IPR009071 6 78 3.60e-27 High mobility group box domain
ENSXETP00000041556 ProSitePatterns PS00353 IPR017967 41 52 - HMG box A DNA-binding domain, conserved site
ENSXETP00000041556 ProSiteProfiles PS50118 IPR009071 95 163 0.00e-00 High mobility group box domain
ENSXETP00000041556 ProSiteProfiles PS50118 IPR009071 9 79 0.00e-00 High mobility group box domain
ENSXETP00000041556 SMART SM00398 IPR009071 8 80 9.90e-28 High mobility group box domain
ENSXETP00000041556 SMART SM00398 IPR009071 94 164 3.60e-32 High mobility group box domain
ENSXETP00000041556 SUPERFAMILY SSF47095 IPR009071 3 81 0.00e-00 High mobility group box domain
ENSXETP00000041556 SUPERFAMILY SSF47095 IPR009071 78 164 0.00e-00 High mobility group box domain

Pfam Annotation
Protein Pfam ID E.value Name Description
ENSXETP00000041556 PF09011 1.09301e-43 HMG_box_2 HMG-box domain
ENSXETP00000041556 PF00505 1.2e-40 HMG_box HMG (high mobility group) box
ENSXETP00000041556 PF14887 0.00024 HMG_box_5 HMG (high mobility group) box 5

Gene Ontology Annotation
Protein Entry Name Space Description
ENSXETP00000041556 GO:0005634 cellular_component nucleus
ENSXETP00000041556 GO:0005694 cellular_component chromosome
ENSXETP00000041556 GO:0003677 molecular_function DNA binding

Orthologs
TAXID Organism Gene ID TAXID Organism Gene ID
9796 Equus caballus 100033873 7425 Nasonia vitripennis 100122354
7029 Acyrthosiphon pisum 100167132 6087 Hydra magnipapillata 100204109
9646 Ailuropoda melanoleuca 100482413 9103 Meleagris gallopavo 100543659
61853 Nomascus leucogenys 100587901 400682 Amphimedon queenslandica 100635010
132113 Bombus impatiens 100749348 143995 Megachile rotundata 100876876
34638 Metaseiulus occidentalis 100907435 9597 Pan paniscus 100980430
9555 Papio anubis 101026485 39432 Saimiri boliviensis 101045330
31033 Takifugu rubripes 101074166 8090 Oryzias latipes 101165167
9669 Mustela putorius furo 101675666 8083 Xiphophorus maculatus 102238067
7897 Latimeria chalumnae 102366474 59463 Myotis lucifugus 102420405
13735 Pelodiscus sinensis 102454149 7227 Drosophila melanogaster 117294
10090 Mus musculus 15289 9913 Bos taurus 282691
9606 Homo sapiens 3146 7668 Strongylocentrotus purpuratus 373332
7463 Apis florea 100871828 7460 Apis mellifera 725551
69293 Gasterosteus aculeatus ENSGACG00000020545 42254 Sorex araneus ENSSARG00000004470
9823 Sus scrofa 445521 7070 Tribolium castaneum 662763
9544 Macaca mulatta 712849 9598 Pan troglodytes 736904
7719 Ciona intestinalis 778643 28377 Anolis carolinensis ENSACAG00000005092
9615 Canis familiaris ENSCAFG00000023930 9358 Choloepus hoffmanni ENSCHOG00000002423
9483 Callithrix jacchus ENSCJAG00000022832 10141 Cavia porcellus ENSCPOG00000003985
51511 Ciona savignyi ENSCSAVG00000000341 7955 Danio rerio ENSDARG00000029722
9361 Dasypus novemcinctus ENSDNOG00000019440 9365 Erinaceus europaeus ENSEEUG00000012238
9371 Echinops telfairi ENSETEG00000004048 9685 Felis catus ENSFCAG00000000200
9031 Gallus gallus ENSGALG00000010745 9595 Gorilla gorilla ENSGGOG00000025109
8049 Gadus morhua ENSGMOG00000019231 9785 Loxodonta africana ENSLAFG00000030388
9315 Macropus eugenii ENSMEUG00000001380 30608 Microcebus murinus ENSMICG00000006213
13616 Monodelphis domestica ENSMODG00000008785 9258 Ornithorhynchus anatinus ENSOANG00000014719
9986 Oryctolagus cuniculus ENSOCUG00000004133 30611 Otolemur garnettii ENSOGAG00000003205
8128 Oreochromis niloticus ENSONIG00000006737 9978 Ochotona princeps ENSOPRG00000003507
9813 Procavia capensis ENSPCAG00000002201 7757 Petromyzon marinus ENSPMAG00000007397
9601 Pongo abelii ENSPPYG00000011668 132908 Pteropus vampyrus ENSPVAG00000001431
10116 Rattus norvegicus ENSRNOG00000029654 9305 Sarcophilus harrisii ENSSHAG00000014034
43179 Ictidomys tridecemlineatus ENSSTOG00000000443 37347 Tupaia belangeri ENSTBEG00000014925
59729 Taeniopygia guttata ENSTGUG00000006267 99883 Tetraodon nigroviridis ENSTNIG00000016258
9478 Tarsius syrichta ENSTSYG00000012587 9739 Tursiops truncatus ENSTTRG00000010327

Paralogs
448228 ENSXETG00000016916