'STRAP:multiple sequence alignments '

charite.christo.protein
Class ChAstexPROXY

java.lang.Object
  extended by charite.christo.AbstractProxy
      extended by charite.christo.protein.AbstractProteinViewerProxy
          extended by charite.christo.protein.ChAstexPROXY
All Implemented Interfaces:
ChRunnable, CommandInterpreter, Disposable, HasControlPanel, HasPropertyMap, HasProtein, ProteinViewer

public class ChAstexPROXY
extends AbstractProteinViewerProxy
implements HasControlPanel

HELP Home: http://openastexviewer.net http://www.astex-therapeutics.com/
License of OpenAstexViewer: WIKI:LGPL
Authors: Mike Hartshorn, Tom Oldfield




Field Summary
 
Fields inherited from class charite.christo.AbstractProxy
ACTIVATION, ADAPTERS_JAR, BIOJAVA_3D, COMMONS_COLLECTIONS, GLUGEN, JCOMMON, JOGL, LOG4J, PFX_INSTALLED, TRY_BOOT_CLASSLOADER
 
Fields inherited from interface charite.christo.protein.ProteinViewer
COMMAND_HIDE_EVERYTHING, COMMANDbackground, COMMANDbiomolecule, COMMANDcartoon, COMMANDcenter, COMMANDcenter_amino, COMMANDchange_object_color, COMMANDcolor, COMMANDdots, COMMANDhighlight_selected_amino_acids, COMMANDhighlight_selected_atoms, COMMANDlabel, COMMANDlabel_color, COMMANDlines, COMMANDmesh, COMMANDobject_delete, COMMANDribbons, COMMANDrotate, COMMANDsa_surface, COMMANDselect, COMMANDselection_name, COMMANDset_rotation_translation, COMMANDshowScriptPanel, COMMANDspheres, COMMANDsticks, COMMANDsurface, COMMANDsurface_color, COMMANDzoom, GET_ATOM_SELECTION_EXAMPLE, GET_AWTMASK_CONT_SELECTION, GET_AWTMASK_DISC_SELECTION, GET_CANVAS, GET_FLAGS, GET_FRAME_TITLE, GET_JMENUBAR, GET_LAST_CREATED_OBJECT, GET_SUPPORTED_COMMANDS, GET_SURFACEOBJECTS, INTERNAL_USE, INTERPRET_NO_MSG_DIALOGS, mapViewer, NONE, PFX_SURFACE_OBJECT, PROPERTY_EXTERNAL_PROCESS, PROPERTY_HAS_CONTEXTMENU, PROPERTY_HAS_SCRIPT_PANEL, PROPERTY_HEAVY_WEIGHT, PROPERTY_MULTI_MOLECULE, PROPERTY_MULTI_VIEW, PROPERTY_NAMED_SELECTIONS, PROPERTY_NEEDS_UPDATE_SURFACES_WHEN_ROTATED, PROPERTY_OPENGL, PROPERTY_RIBBON_COLOR_NO_CHANGE, PROPERTY_SEQUENCE_CURSOR_DELAYED, PROPERTY_TK, PROTEIN, RESIDUES, SELECTION_CURSOR, SELECTION_PICKED, SET_PROTEIN_VERBOSE, SET_RUN_AFTER_INSTALLATION, SHOW_CURSOR_IF_OTHER_PROTEIN, STYLE_COMMANDS
 
Fields inherited from interface charite.christo.ChRunnable
APPEND, COLUMN_TITLE, DOWNLOAD_FINISHED, GET_PANEL, ICON, INTERPRET_LINE, IS_DRAG4XY, ITEM_TEXT, MODIFY_RENDERER_COMPONENT, PROGRESS, REPAINT_CURSOR, SAY_DOWNLOADING, SET_ICON_IMAGE, SET_TREE_VALUE, SHOW_IN_FRAME, TAB_TEXT, TIP_TEXT
 
Constructor Summary
ChAstexPROXY()
           
 
Method Summary
static java.lang.String getCustomizableExamples()
           
static java.lang.String getCustomizableInitCommands()
           
 java.lang.String getRequiredJars()
           
static java.lang.String getWordCompletionList()
           
 
Methods inherited from class charite.christo.protein.AbstractProteinViewerProxy
dispose, getProperty, getProtein, getViewersSharingViewV, handleEvent, pv, run, setProperty, setProtein, toString
 
Methods inherited from class charite.christo.AbstractProxy
disposeProxy, getControlPanel, getPrgParas, getPropertyMap, getProxy, getScore, getSharedControlPanel, getSharedInstance, interpret, jarFile, jarsContainingNativeLibraries, proxyObject, proxyObjectRun, remoteURLs, setOptions, setSharedInstance, usrShareJava
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface charite.christo.HasControlPanel
getControlPanel
 
Methods inherited from interface charite.christo.CommandInterpreter
interpret
 

Constructor Detail

ChAstexPROXY

public ChAstexPROXY()
Method Detail

getRequiredJars

public java.lang.String getRequiredJars()
Specified by:
getRequiredJars in class AbstractProxy

getCustomizableInitCommands

public static java.lang.String getCustomizableInitCommands()

getCustomizableExamples

public static java.lang.String getCustomizableExamples()

getWordCompletionList

public static java.lang.String getWordCompletionList()

'STRAP:multiple sequence alignments '

'The most important classes are StrapAlign, Protein and StrapEvent.'