Basic Information
Gene ID 100328994
Gene Name lmx1
Full Name PREDICTED: Lim homeobox transcription factor [Saccoglossuskowalevskii].
Organism Saccoglossus kowalevskii [10224]

Cross Reference
UniProt NULL UniGene NULL
PDB NULL OMIM NULL
KEGG NULL UCSC NULL

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING NULL

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
XP_002738638 Gene3D G3DSA:1.10.10.60 IPR009057 205 269 2.60e-22 Homeodomain-like
XP_002738638 Gene3D G3DSA:2.10.110.10 IPR001781 105 157 7.50e-15 Zinc finger, LIM-type
XP_002738638 Gene3D G3DSA:2.10.110.10 IPR001781 40 104 9.80e-19 Zinc finger, LIM-type
XP_002738638 Pfam PF00046 IPR001356 218 274 4.80e-17 Homeobox domain
XP_002738638 Pfam PF00412 IPR001781 100 157 5.40e-14 Zinc finger, LIM-type
XP_002738638 Pfam PF00412 IPR001781 41 96 6.50e-17 Zinc finger, LIM-type
XP_002738638 ProSitePatterns PS00027 IPR017970 250 273 - Homeobox, conserved site
XP_002738638 ProSitePatterns PS00478 IPR001781 100 135 - Zinc finger, LIM-type
XP_002738638 ProSitePatterns PS00478 IPR001781 41 75 - Zinc finger, LIM-type
XP_002738638 ProSiteProfiles PS50023 IPR001781 39 98 0.00e-00 Zinc finger, LIM-type
XP_002738638 ProSiteProfiles PS50023 IPR001781 99 160 0.00e-00 Zinc finger, LIM-type
XP_002738638 ProSiteProfiles PS50071 IPR001356 215 275 0.00e-00 Homeobox domain
XP_002738638 SMART SM00132 IPR001781 40 91 2.10e-20 Zinc finger, LIM-type
XP_002738638 SMART SM00132 IPR001781 99 153 1.70e-18 Zinc finger, LIM-type
XP_002738638 SMART SM00389 IPR001356 217 279 7.10e-24 Homeobox domain
XP_002738638 SUPERFAMILY SSF46689 IPR009057 201 277 0.00e-00 Homeodomain-like

Pfam Annotation
Protein Pfam ID E.value Name Description
XP_002738638 PF00412 2.2e-31 LIM LIM domain
XP_002738638 PF00046 4.8e-17 Homeobox Homeobox domain
XP_002738638 PF05920 4.4e-05 Homeobox_KN Homeobox KN domain

Gene Ontology Annotation
Protein Entry Name Space Description
XP_002738638 GO:0006351 biological_process transcription, DNA-templated
XP_002738638 GO:0006355 biological_process regulation of transcription, DNA-templated
XP_002738638 GO:0007275 biological_process multicellular organismal development
XP_002738638 GO:0005634 cellular_component nucleus
XP_002738638 GO:0003700 molecular_function sequence-specific DNA binding transcription factor activity
XP_002738638 GO:0008270 molecular_function zinc ion binding
XP_002738638 GO:0043565 molecular_function sequence-specific DNA binding

Orthologs
TAXID Organism Gene ID TAXID Organism Gene ID
13616 Monodelphis domestica 100016205 7425 Nasonia vitripennis 100121564
7029 Acyrthosiphon pisum 100166469 9986 Oryctolagus cuniculus 100338248
9646 Ailuropoda melanoleuca 100475199 30195 Bombus terrestris 100644798
8128 Oreochromis niloticus 100696266 132113 Bombus impatiens 100744167
10029 Cricetulus griseus 100760113 7463 Apis florea 100872112
143995 Megachile rotundata 100879464 34638 Metaseiulus occidentalis 100909136
9597 Pan paniscus 100984491 9555 Papio anubis 101014470
39432 Saimiri boliviensis 101047214 9685 Felis catus 101086098
8090 Oryzias latipes 101159592 9669 Mustela putorius furo 101686194
13735 Pelodiscus sinensis 102445048 10090 Mus musculus 110648
7227 Drosophila melanogaster 39406 7668 Strongylocentrotus purpuratus 585635
9615 Canis familiaris 609061 7070 Tribolium castaneum 655586
7460 Apis mellifera 724778 28377 Anolis carolinensis ENSACAG00000004557
9913 Bos taurus ENSBTAG00000010228 7719 Ciona intestinalis ENSCING00000013048
9483 Callithrix jacchus ENSCJAG00000007071 10141 Cavia porcellus ENSCPOG00000023429
51511 Ciona savignyi ENSCSAVG00000000947 7955 Danio rerio ENSDARG00000019306
9361 Dasypus novemcinctus ENSDNOG00000012261 10020 Dipodomys ordii ENSDORG00000014036
9796 Equus caballus ENSECAG00000018605 9365 Erinaceus europaeus ENSEEUG00000007978
9371 Echinops telfairi ENSETEG00000005532 69293 Gasterosteus aculeatus ENSGACG00000018323
9031 Gallus gallus ENSGALG00000000936 8049 Gadus morhua ENSGMOG00000006452
7897 Latimeria chalumnae ENSLACG00000015722 9785 Loxodonta africana ENSLAFG00000015481
9315 Macropus eugenii ENSMEUG00000012451 9103 Meleagris gallopavo ENSMGAG00000003603
9544 Macaca mulatta ENSMMUG00000002236 61853 Nomascus leucogenys ENSNLEG00000017412
30611 Otolemur garnettii ENSOGAG00000001158 9978 Ochotona princeps ENSOPRG00000014466
9598 Pan troglodytes ENSPTRG00000021377 132908 Pteropus vampyrus ENSPVAG00000004265
10116 Rattus norvegicus ENSRNOG00000017019 9305 Sarcophilus harrisii ENSSHAG00000014535
9823 Sus scrofa ENSSSCG00000005606 43179 Ictidomys tridecemlineatus ENSSTOG00000026973
59729 Taeniopygia guttata ENSTGUG00000017316 99883 Tetraodon nigroviridis ENSTNIG00000018553
31033 Takifugu rubripes ENSTRUG00000009042 9478 Tarsius syrichta ENSTSYG00000012930
9739 Tursiops truncatus ENSTTRG00000013199 30538 Vicugna pacos ENSVPAG00000004576
8364 Xenopus tropicalis ENSXETG00000013183 8083 Xiphophorus maculatus ENSXMAG00000013334
9595 Gorilla gorilla 101151857 9813 Procavia capensis ENSPCAG00000013608