Basic Information | |||
Gene ID | 585635 | ||
Gene Name | LOC585635 | ||
Full Name | PREDICTED: LIM homeobox transcription factor 1-beta-like[Strongylocentrotus purpuratus]. | ||
Organism | Strongylocentrotus purpuratus [7668] |
Cross Reference | |||
UniProt | NULL | UniGene | NULL |
PDB | NULL | OMIM | NULL |
KEGG | NULL | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | NULL |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
XP_790548 | Gene3D | G3DSA:1.10.10.60 | IPR009057 | 156 | 222 | 2.30e-23 | Homeodomain-like |
XP_790548 | Gene3D | G3DSA:2.10.110.10 | IPR001781 | 32 | 95 | 1.10e-15 | Zinc finger, LIM-type |
XP_790548 | Gene3D | G3DSA:2.10.110.10 | IPR001781 | 96 | 148 | 1.50e-16 | Zinc finger, LIM-type |
XP_790548 | Pfam | PF00046 | IPR001356 | 171 | 227 | 1.60e-17 | Homeobox domain |
XP_790548 | Pfam | PF00412 | IPR001781 | 33 | 88 | 5.90e-14 | Zinc finger, LIM-type |
XP_790548 | Pfam | PF00412 | IPR001781 | 92 | 149 | 1.40e-16 | Zinc finger, LIM-type |
XP_790548 | ProSitePatterns | PS00027 | IPR017970 | 203 | 226 | - | Homeobox, conserved site |
XP_790548 | ProSitePatterns | PS00478 | IPR001781 | 33 | 67 | - | Zinc finger, LIM-type |
XP_790548 | ProSitePatterns | PS00478 | IPR001781 | 92 | 127 | - | Zinc finger, LIM-type |
XP_790548 | ProSiteProfiles | PS50023 | IPR001781 | 31 | 89 | 0.00e-00 | Zinc finger, LIM-type |
XP_790548 | ProSiteProfiles | PS50023 | IPR001781 | 90 | 152 | 0.00e-00 | Zinc finger, LIM-type |
XP_790548 | ProSiteProfiles | PS50071 | IPR001356 | 168 | 228 | 0.00e-00 | Homeobox domain |
XP_790548 | SMART | SM00132 | IPR001781 | 32 | 83 | 2.60e-17 | Zinc finger, LIM-type |
XP_790548 | SMART | SM00132 | IPR001781 | 91 | 145 | 9.00e-20 | Zinc finger, LIM-type |
XP_790548 | SMART | SM00389 | IPR001356 | 170 | 232 | 4.70e-24 | Homeobox domain |
XP_790548 | SUPERFAMILY | SSF46689 | IPR009057 | 156 | 228 | 0.00e-00 | Homeodomain-like |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
XP_790548 | PF00412 | 6.5e-31 | LIM | LIM domain |
XP_790548 | PF00046 | 9.8e-18 | Homeobox | Homeobox domain |
XP_790548 | PF05920 | 7e-05 | Homeobox_KN | Homeobox KN domain |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
XP_790548 | GO:0006351 | biological_process | transcription, DNA-templated |
XP_790548 | GO:0006355 | biological_process | regulation of transcription, DNA-templated |
XP_790548 | GO:0007275 | biological_process | multicellular organismal development |
XP_790548 | GO:0005634 | cellular_component | nucleus |
XP_790548 | GO:0003700 | molecular_function | sequence-specific DNA binding transcription factor activity |
XP_790548 | GO:0008270 | molecular_function | zinc ion binding |
XP_790548 | GO:0043565 | molecular_function | sequence-specific DNA binding |
Orthologs | |||||
TAXID | Organism | Gene ID | TAXID | Organism | Gene ID |
10224 | Saccoglossus kowalevskii | 100328994 | 9595 | Gorilla gorilla | 101151857 |
13616 | Monodelphis domestica | 100016205 | 7425 | Nasonia vitripennis | 100121564 |
7029 | Acyrthosiphon pisum | 100166469 | 9986 | Oryctolagus cuniculus | 100338248 |
9646 | Ailuropoda melanoleuca | 100475199 | 30195 | Bombus terrestris | 100644798 |
8128 | Oreochromis niloticus | 100696266 | 132113 | Bombus impatiens | 100744167 |
10029 | Cricetulus griseus | 100760113 | 7463 | Apis florea | 100872112 |
143995 | Megachile rotundata | 100879464 | 34638 | Metaseiulus occidentalis | 100909136 |
9597 | Pan paniscus | 100984491 | 9555 | Papio anubis | 101014470 |
39432 | Saimiri boliviensis | 101047214 | 9685 | Felis catus | 101086098 |
8090 | Oryzias latipes | 101159592 | 9669 | Mustela putorius furo | 101686194 |
13735 | Pelodiscus sinensis | 102445048 | 10090 | Mus musculus | 110648 |
7227 | Drosophila melanogaster | 39406 | 7955 | Danio rerio | 554360 |
9615 | Canis familiaris | 609061 | 7070 | Tribolium castaneum | 655586 |
7460 | Apis mellifera | 724778 | 28377 | Anolis carolinensis | ENSACAG00000004557 |
9913 | Bos taurus | ENSBTAG00000010228 | 7719 | Ciona intestinalis | ENSCING00000013048 |
9483 | Callithrix jacchus | ENSCJAG00000007071 | 10141 | Cavia porcellus | ENSCPOG00000023429 |
9361 | Dasypus novemcinctus | ENSDNOG00000012261 | 10020 | Dipodomys ordii | ENSDORG00000014036 |
9796 | Equus caballus | ENSECAG00000018605 | 9365 | Erinaceus europaeus | ENSEEUG00000007978 |
9371 | Echinops telfairi | ENSETEG00000005532 | 69293 | Gasterosteus aculeatus | ENSGACG00000012015 |
9031 | Gallus gallus | ENSGALG00000000936 | 8049 | Gadus morhua | ENSGMOG00000006452 |
7897 | Latimeria chalumnae | ENSLACG00000015722 | 9785 | Loxodonta africana | ENSLAFG00000015481 |
9315 | Macropus eugenii | ENSMEUG00000012451 | 9103 | Meleagris gallopavo | ENSMGAG00000003603 |
9544 | Macaca mulatta | ENSMMUG00000002236 | 61853 | Nomascus leucogenys | ENSNLEG00000017412 |
30611 | Otolemur garnettii | ENSOGAG00000001158 | 9978 | Ochotona princeps | ENSOPRG00000015599 |
9598 | Pan troglodytes | ENSPTRG00000021377 | 132908 | Pteropus vampyrus | ENSPVAG00000004265 |
10116 | Rattus norvegicus | ENSRNOG00000017019 | 9823 | Sus scrofa | ENSSSCG00000005606 |
43179 | Ictidomys tridecemlineatus | ENSSTOG00000026973 | 59729 | Taeniopygia guttata | ENSTGUG00000017316 |
99883 | Tetraodon nigroviridis | ENSTNIG00000018553 | 31033 | Takifugu rubripes | ENSTRUG00000009042 |
9478 | Tarsius syrichta | ENSTSYG00000012930 | 9739 | Tursiops truncatus | ENSTTRG00000003649 |
30538 | Vicugna pacos | ENSVPAG00000004576 | 8364 | Xenopus tropicalis | ENSXETG00000013183 |
8083 | Xiphophorus maculatus | ENSXMAG00000013334 | 9813 | Procavia capensis | ENSPCAG00000013608 |