Basic Information
Gene ID 110648 ; Check Expression Profles ; Check TFs & Targets Binding
Gene Name Lmx1a
Full Name LIM homeobox transcription factor 1-alpha
Organism Mus musculus [10090]

Cross Reference
UniProt Q9JKU8 UniGene Mm.330081
PDB NULL OMIM NULL
KEGG mmu:110648 UCSC uc007dlc.1

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING NULL

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
ENSEMBL
REFSEQ
REFSEQ
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
ENSMUSP00000107008 Gene3D G3DSA:1.10.10.60 IPR009057 180 247 7.80e-24 Homeodomain-like
ENSMUSP00000107008 Gene3D G3DSA:2.10.110.10 IPR001781 32 96 1.60e-15 Zinc finger, LIM-type
ENSMUSP00000107008 Gene3D G3DSA:2.10.110.10 IPR001781 97 150 4.40e-15 Zinc finger, LIM-type
ENSMUSP00000107008 Pfam PF00046 IPR001356 196 252 1.50e-17 Homeobox domain
ENSMUSP00000107008 Pfam PF00412 IPR001781 35 90 2.50e-14 Zinc finger, LIM-type
ENSMUSP00000107008 Pfam PF00412 IPR001781 94 151 1.30e-15 Zinc finger, LIM-type
ENSMUSP00000107008 ProSitePatterns PS00027 IPR017970 228 251 - Homeobox, conserved site
ENSMUSP00000107008 ProSitePatterns PS00478 IPR001781 35 69 - Zinc finger, LIM-type
ENSMUSP00000107008 ProSitePatterns PS00478 IPR001781 94 129 - Zinc finger, LIM-type
ENSMUSP00000107008 ProSiteProfiles PS50023 IPR001781 33 92 0.00e-00 Zinc finger, LIM-type
ENSMUSP00000107008 ProSiteProfiles PS50023 IPR001781 93 154 0.00e-00 Zinc finger, LIM-type
ENSMUSP00000107008 ProSiteProfiles PS50071 IPR001356 193 253 0.00e-00 Homeobox domain
ENSMUSP00000107008 SMART SM00132 IPR001781 34 85 1.10e-17 Zinc finger, LIM-type
ENSMUSP00000107008 SMART SM00132 IPR001781 93 147 1.30e-19 Zinc finger, LIM-type
ENSMUSP00000107008 SMART SM00389 IPR001356 195 257 1.00e-23 Homeobox domain
ENSMUSP00000107008 SUPERFAMILY SSF46689 IPR009057 186 253 0.00e-00 Homeodomain-like

Pfam Annotation
Protein Pfam ID E.value Name Description
ENSMUSP00000107008 PF00412 2.1e-30 LIM LIM domain
ENSMUSP00000107008 PF00046 1.5e-17 Homeobox Homeobox domain
ENSMUSP00000107008 PF05920 0.00011 Homeobox_KN Homeobox KN domain

Gene Ontology Annotation
Protein Entry Name Space Description
ENSMUSP00000107008 GO:0006351 biological_process transcription, DNA-templated
ENSMUSP00000107008 GO:0006355 biological_process regulation of transcription, DNA-templated
ENSMUSP00000107008 GO:0007275 biological_process multicellular organismal development
ENSMUSP00000107008 GO:0005634 cellular_component nucleus
ENSMUSP00000107008 GO:0003700 molecular_function sequence-specific DNA binding transcription factor activity
ENSMUSP00000107008 GO:0008270 molecular_function zinc ion binding
ENSMUSP00000107008 GO:0043565 molecular_function sequence-specific DNA binding

Orthologs
TAXID Organism Gene ID TAXID Organism Gene ID
7425 Nasonia vitripennis 100121564 10224 Saccoglossus kowalevskii 100328994
9986 Oryctolagus cuniculus 100338248 9601 Pongo abelii 100451412
400682 Amphimedon queenslandica 100634938 30195 Bombus terrestris 100644798
7463 Apis florea 100872112 34638 Metaseiulus occidentalis 100909136
9597 Pan paniscus 100991773 9555 Papio anubis 101014470
9595 Gorilla gorilla 101151857 9669 Mustela putorius furo 101693093
7029 Acyrthosiphon pisum 100166469 9483 Callithrix jacchus 100387212
9646 Ailuropoda melanoleuca 100475199 9785 Loxodonta africana 100658788
8128 Oreochromis niloticus 100696266 10141 Cavia porcellus 100726831
132113 Bombus impatiens 100744167 10029 Cricetulus griseus 100760113
143995 Megachile rotundata 100879464 39432 Saimiri boliviensis 101039698
9685 Felis catus 101081519 8090 Oryzias latipes 101159592
6239 Caenorhabditis elegans 181012 7227 Drosophila melanogaster 39406
9606 Homo sapiens 64211 28377 Anolis carolinensis ENSACAG00000004557
7719 Ciona intestinalis ENSCING00000013048 9361 Dasypus novemcinctus ENSDNOG00000012261
9365 Erinaceus europaeus ENSEEUG00000007978 9371 Echinops telfairi ENSETEG00000005532
69293 Gasterosteus aculeatus ENSGACG00000018323 9031 Gallus gallus ENSGALG00000000936
8049 Gadus morhua ENSGMOG00000006452 7897 Latimeria chalumnae ENSLACG00000014991
9103 Meleagris gallopavo ENSMGAG00000003603 59463 Myotis lucifugus ENSMLUG00000010463
61853 Nomascus leucogenys ENSNLEG00000014674 9258 Ornithorhynchus anatinus ENSOANG00000022733
9978 Ochotona princeps ENSOPRG00000014466 132908 Pteropus vampyrus ENSPVAG00000004265
9305 Sarcophilus harrisii ENSSHAG00000014535 9823 Sus scrofa ENSSSCG00000006329
43179 Ictidomys tridecemlineatus ENSSTOG00000005189 37347 Tupaia belangeri ENSTBEG00000014918
59729 Taeniopygia guttata ENSTGUG00000017316 99883 Tetraodon nigroviridis ENSTNIG00000018553
9478 Tarsius syrichta ENSTSYG00000012930 9739 Tursiops truncatus ENSTTRG00000003649
30538 Vicugna pacos ENSVPAG00000004576 8364 Xenopus tropicalis ENSXETG00000013183
8083 Xiphophorus maculatus ENSXMAG00000013334 7955 Danio rerio 554360
7668 Strongylocentrotus purpuratus 585635 9615 Canis familiaris 609061
7070 Tribolium castaneum 655586 9544 Macaca mulatta 694542
7460 Apis mellifera 724778 9598 Pan troglodytes 747979
9913 Bos taurus ENSBTAG00000010228 9358 Choloepus hoffmanni ENSCHOG00000013620
51511 Ciona savignyi ENSCSAVG00000000947 10020 Dipodomys ordii ENSDORG00000014036
9796 Equus caballus ENSECAG00000018605 9315 Macropus eugenii ENSMEUG00000012451
30608 Microcebus murinus ENSMICG00000009958 13616 Monodelphis domestica ENSMODG00000001270
30611 Otolemur garnettii ENSOGAG00000011315 9813 Procavia capensis ENSPCAG00000013608
13735 Pelodiscus sinensis ENSPSIG00000005639 10116 Rattus norvegicus ENSRNOG00000017019
31033 Takifugu rubripes ENSTRUG00000009042