Basic Information
Gene ID 100631963
Gene Name LOC100631963
Full Name PREDICTED: cold shock domain-containing protein E1-like [Amphimedonqueenslandica].
Organism Amphimedon queenslandica [400682]

Cross Reference
UniProt NULL UniGene NULL
PDB NULL OMIM NULL
KEGG NULL UCSC NULL

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING NULL

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
XP_003390314 Gene3D G3DSA:2.40.50.140 IPR012340 112 163 6.60e-05 Nucleic acid-binding, OB-fold
XP_003390314 Gene3D G3DSA:2.40.50.140 IPR012340 168 235 6.20e-20 Nucleic acid-binding, OB-fold
XP_003390314 Gene3D G3DSA:2.40.50.140 IPR012340 2 62 1.30e-20 Nucleic acid-binding, OB-fold
XP_003390314 Gene3D G3DSA:2.40.50.140 IPR012340 333 401 3.70e-19 Nucleic acid-binding, OB-fold
XP_003390314 Gene3D G3DSA:2.40.50.140 IPR012340 498 568 5.20e-17 Nucleic acid-binding, OB-fold
XP_003390314 Gene3D G3DSA:2.40.50.140 IPR012340 658 724 4.40e-15 Nucleic acid-binding, OB-fold
XP_003390314 Pfam PF00313 IPR002059 168 228 6.80e-13 Cold-shock protein, DNA-binding
XP_003390314 Pfam PF00313 IPR002059 335 395 4.40e-07 Cold-shock protein, DNA-binding
XP_003390314 Pfam PF00313 IPR002059 3 54 1.60e-10 Cold-shock protein, DNA-binding
XP_003390314 Pfam PF00313 IPR002059 500 562 1.50e-08 Cold-shock protein, DNA-binding
XP_003390314 Pfam PF00313 IPR002059 658 723 5.40e-08 Cold-shock protein, DNA-binding
XP_003390314 Pfam PF12901 IPR024642 747 761 4.70e-05 SUZ-C domain
XP_003390314 ProSitePatterns PS00352 IPR019844 178 197 - Cold-shock conserved site
XP_003390314 SMART SM00357 IPR011129 1 57 2.70e-06 Cold shock protein
XP_003390314 SMART SM00357 IPR011129 168 230 1.10e-11 Cold shock protein
XP_003390314 SMART SM00357 IPR011129 335 398 1.40e-07 Cold shock protein
XP_003390314 SMART SM00357 IPR011129 500 563 5.20e-12 Cold shock protein
XP_003390314 SMART SM00357 IPR011129 659 724 1.10e-04 Cold shock protein
XP_003390314 SUPERFAMILY SSF50249 IPR012340 166 234 0.00e-00 Nucleic acid-binding, OB-fold
XP_003390314 SUPERFAMILY SSF50249 IPR012340 328 399 0.00e-00 Nucleic acid-binding, OB-fold
XP_003390314 SUPERFAMILY SSF50249 IPR012340 3 61 0.00e-00 Nucleic acid-binding, OB-fold
XP_003390314 SUPERFAMILY SSF50249 IPR012340 494 567 0.00e-00 Nucleic acid-binding, OB-fold
XP_003390314 SUPERFAMILY SSF50249 IPR012340 656 724 0.00e-00 Nucleic acid-binding, OB-fold

Pfam Annotation
Protein Pfam ID E.value Name Description
XP_003390314 PF00313 0 CSD 'Cold-shock' DNA-binding domain
XP_003390314 PF14444 1.1e-08 S1-like S1-like
XP_003390314 PF07497 1.5e-05 Rho_RNA_bind Rho termination factor, RNA-binding domain
XP_003390314 PF12901 3.6e-05 SUZ-C SUZ-C motif
XP_003390314 PF11604 8.6e-05 CusF_Ec Copper binding periplasmic protein CusF
XP_003390314 PF08206 0.00064 OB_RNB Ribonuclease B OB domain

Gene Ontology Annotation
Protein Entry Name Space Description
XP_003390314 GO:0006355 biological_process regulation of transcription, DNA-templated
XP_003390314 GO:0070966 biological_process nuclear-transcribed mRNA catabolic process, no-go decay
XP_003390314 GO:0005737 cellular_component cytoplasm
XP_003390314 GO:0070937 cellular_component CRD-mediated mRNA stability complex
XP_003390314 GO:0003677 molecular_function DNA binding
XP_003390314 GO:0003723 molecular_function RNA binding

Orthologs
TAXID Organism Gene ID TAXID Organism Gene ID
13616 Monodelphis domestica 100009761 7425 Nasonia vitripennis 100123206
61853 Nomascus leucogenys 100590871 8128 Oreochromis niloticus 100701469
34638 Metaseiulus occidentalis 100908518 9597 Pan paniscus 100968628
9555 Papio anubis 101024024 39432 Saimiri boliviensis 101034862
9595 Gorilla gorilla 101146917 59463 Myotis lucifugus 102429010
7070 Tribolium castaneum 655517 9606 Homo sapiens 7812
9646 Ailuropoda melanoleuca ENSAMEG00000017129 7719 Ciona intestinalis ENSCING00000014465
9483 Callithrix jacchus ENSCJAG00000012565 51511 Ciona savignyi ENSCSAVG00000008100
9361 Dasypus novemcinctus ENSDNOG00000010287 10020 Dipodomys ordii ENSDORG00000011609
9796 Equus caballus ENSECAG00000020885 9371 Echinops telfairi ENSETEG00000006280
9685 Felis catus ENSFCAG00000029266 69293 Gasterosteus aculeatus ENSGACG00000004544
9031 Gallus gallus ENSGALG00000002139 8049 Gadus morhua ENSGMOG00000012731
9315 Macropus eugenii ENSMEUG00000002677 9103 Meleagris gallopavo ENSMGAG00000016381
9258 Ornithorhynchus anatinus ENSOANG00000003346 9813 Procavia capensis ENSPCAG00000014368
9601 Pongo abelii ENSPPYG00000000996 132908 Pteropus vampyrus ENSPVAG00000008225
42254 Sorex araneus ENSSARG00000000738 9823 Sus scrofa ENSSSCG00000006752
59729 Taeniopygia guttata ENSTGUG00000000972 31033 Takifugu rubripes ENSTRUG00000007996
9478 Tarsius syrichta ENSTSYG00000003747 9739 Tursiops truncatus ENSTTRG00000015583
30538 Vicugna pacos ENSVPAG00000000749 8083 Xiphophorus maculatus ENSXMAG00000009080
10090 Mus musculus 229663 9615 Canis familiaris ENSCAFG00000009618
9358 Choloepus hoffmanni ENSCHOG00000000918 9365 Erinaceus europaeus ENSEEUG00000006286
9785 Loxodonta africana ENSLAFG00000007150 9669 Mustela putorius furo ENSMPUG00000005753
9978 Ochotona princeps ENSOPRG00000005002 8090 Oryzias latipes ENSORLG00000000707
13735 Pelodiscus sinensis ENSPSIG00000003823 99883 Tetraodon nigroviridis ENSTNIG00000010878