Basic Information | |||
Gene ID | ENSLAFG00000007150 | ||
Gene Name | CSDE1 | ||
Full Name | Uncharacterized protein | ||
Organism | Loxodonta africana [9785] |
Cross Reference | |||
UniProt | G3SZH0 | UniGene | NULL |
PDB | NULL | OMIM | NULL |
KEGG | NULL | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | NULL |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
ENSLAFP00000006015 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 186 | 254 | 9.30e-26 | Nucleic acid-binding, OB-fold |
ENSLAFP00000006015 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 349 | 419 | 1.80e-24 | Nucleic acid-binding, OB-fold |
ENSLAFP00000006015 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 458 | 515 | 1.10e-08 | Nucleic acid-binding, OB-fold |
ENSLAFP00000006015 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 519 | 583 | 5.40e-21 | Nucleic acid-binding, OB-fold |
ENSLAFP00000006015 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 57 | 125 | 1.30e-25 | Nucleic acid-binding, OB-fold |
ENSLAFP00000006015 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 678 | 743 | 6.20e-21 | Nucleic acid-binding, OB-fold |
ENSLAFP00000006015 | Pfam | PF00313 | IPR002059 | 187 | 248 | 8.20e-16 | Cold-shock protein, DNA-binding |
ENSLAFP00000006015 | Pfam | PF00313 | IPR002059 | 352 | 412 | 9.10e-09 | Cold-shock protein, DNA-binding |
ENSLAFP00000006015 | Pfam | PF00313 | IPR002059 | 522 | 582 | 3.30e-14 | Cold-shock protein, DNA-binding |
ENSLAFP00000006015 | Pfam | PF00313 | IPR002059 | 59 | 121 | 1.80e-14 | Cold-shock protein, DNA-binding |
ENSLAFP00000006015 | Pfam | PF00313 | IPR002059 | 676 | 738 | 3.90e-15 | Cold-shock protein, DNA-binding |
ENSLAFP00000006015 | Pfam | PF12901 | IPR024642 | 757 | 790 | 7.60e-13 | SUZ-C domain |
ENSLAFP00000006015 | ProSitePatterns | PS00352 | IPR019844 | 198 | 217 | - | Cold-shock conserved site |
ENSLAFP00000006015 | ProSitePatterns | PS00352 | IPR019844 | 361 | 380 | - | Cold-shock conserved site |
ENSLAFP00000006015 | ProSitePatterns | PS00352 | IPR019844 | 531 | 550 | - | Cold-shock conserved site |
ENSLAFP00000006015 | ProSitePatterns | PS00352 | IPR019844 | 69 | 88 | - | Cold-shock conserved site |
ENSLAFP00000006015 | SMART | SM00357 | IPR011129 | 188 | 249 | 7.80e-20 | Cold shock protein |
ENSLAFP00000006015 | SMART | SM00357 | IPR011129 | 351 | 414 | 3.00e-18 | Cold shock protein |
ENSLAFP00000006015 | SMART | SM00357 | IPR011129 | 521 | 583 | 1.60e-17 | Cold shock protein |
ENSLAFP00000006015 | SMART | SM00357 | IPR011129 | 59 | 122 | 9.70e-19 | Cold shock protein |
ENSLAFP00000006015 | SMART | SM00357 | IPR011129 | 676 | 739 | 1.10e-18 | Cold shock protein |
ENSLAFP00000006015 | SUPERFAMILY | SSF50249 | IPR012340 | 182 | 254 | 0.00e-00 | Nucleic acid-binding, OB-fold |
ENSLAFP00000006015 | SUPERFAMILY | SSF50249 | IPR012340 | 337 | 418 | 0.00e-00 | Nucleic acid-binding, OB-fold |
ENSLAFP00000006015 | SUPERFAMILY | SSF50249 | IPR012340 | 49 | 125 | 0.00e-00 | Nucleic acid-binding, OB-fold |
ENSLAFP00000006015 | SUPERFAMILY | SSF50249 | IPR012340 | 504 | 583 | 0.00e-00 | Nucleic acid-binding, OB-fold |
ENSLAFP00000006015 | SUPERFAMILY | SSF50249 | IPR012340 | 662 | 742 | 0.00e-00 | Nucleic acid-binding, OB-fold |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
ENSLAFP00000006015 | PF00313 | 0 | CSD | 'Cold-shock' DNA-binding domain |
ENSLAFP00000006015 | PF14444 | 1.5e-15 | S1-like | S1-like |
ENSLAFP00000006015 | PF12901 | 3.7e-13 | SUZ-C | SUZ-C motif |
ENSLAFP00000006015 | PF11604 | 4.7e-06 | CusF_Ec | Copper binding periplasmic protein CusF |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
ENSLAFP00000006015 | GO:0006355 | biological_process | regulation of transcription, DNA-templated |
ENSLAFP00000006015 | GO:0070966 | biological_process | nuclear-transcribed mRNA catabolic process, no-go decay |
ENSLAFP00000006015 | GO:0005737 | cellular_component | cytoplasm |
ENSLAFP00000006015 | GO:0070937 | cellular_component | CRD-mediated mRNA stability complex |
ENSLAFP00000006015 | GO:0003677 | molecular_function | DNA binding |
ENSLAFP00000006015 | GO:0003723 | molecular_function | RNA binding |
Orthologs | |||||
TAXID | Organism | Gene ID | TAXID | Organism | Gene ID |
13616 | Monodelphis domestica | 100009761 | 10090 | Mus musculus | 229663 |
9615 | Canis familiaris | ENSCAFG00000009618 | 9358 | Choloepus hoffmanni | ENSCHOG00000000918 |
9365 | Erinaceus europaeus | ENSEEUG00000006286 | 7425 | Nasonia vitripennis | 100123206 |
61853 | Nomascus leucogenys | 100590871 | 400682 | Amphimedon queenslandica | 100631963 |
8128 | Oreochromis niloticus | 100701469 | 34638 | Metaseiulus occidentalis | 100908518 |
9597 | Pan paniscus | 100968628 | 9555 | Papio anubis | 101024024 |
39432 | Saimiri boliviensis | 101034862 | 9595 | Gorilla gorilla | 101146917 |
59463 | Myotis lucifugus | 102429010 | 7070 | Tribolium castaneum | 655517 |
9606 | Homo sapiens | 7812 | 9646 | Ailuropoda melanoleuca | ENSAMEG00000017129 |
7719 | Ciona intestinalis | ENSCING00000014465 | 9483 | Callithrix jacchus | ENSCJAG00000012565 |
51511 | Ciona savignyi | ENSCSAVG00000008100 | 9361 | Dasypus novemcinctus | ENSDNOG00000010287 |
10020 | Dipodomys ordii | ENSDORG00000011609 | 9796 | Equus caballus | ENSECAG00000020885 |
9371 | Echinops telfairi | ENSETEG00000006280 | 9685 | Felis catus | ENSFCAG00000029266 |
69293 | Gasterosteus aculeatus | ENSGACG00000004544 | 9031 | Gallus gallus | ENSGALG00000002139 |
8049 | Gadus morhua | ENSGMOG00000012731 | 9315 | Macropus eugenii | ENSMEUG00000002677 |
9103 | Meleagris gallopavo | ENSMGAG00000016381 | 9258 | Ornithorhynchus anatinus | ENSOANG00000003346 |
9813 | Procavia capensis | ENSPCAG00000014368 | 9601 | Pongo abelii | ENSPPYG00000000996 |
132908 | Pteropus vampyrus | ENSPVAG00000008225 | 42254 | Sorex araneus | ENSSARG00000000738 |
9823 | Sus scrofa | ENSSSCG00000006752 | 59729 | Taeniopygia guttata | ENSTGUG00000000972 |
31033 | Takifugu rubripes | ENSTRUG00000007996 | 9478 | Tarsius syrichta | ENSTSYG00000003747 |
9739 | Tursiops truncatus | ENSTTRG00000015583 | 30538 | Vicugna pacos | ENSVPAG00000000749 |
8083 | Xiphophorus maculatus | ENSXMAG00000009080 | 9669 | Mustela putorius furo | ENSMPUG00000005753 |
9978 | Ochotona princeps | ENSOPRG00000005002 | 8090 | Oryzias latipes | ENSORLG00000000707 |
13735 | Pelodiscus sinensis | ENSPSIG00000003823 | 99883 | Tetraodon nigroviridis | ENSTNIG00000010878 |