Basic Information | |||
Gene ID | 100396115 | ||
Gene Name | SOX17 | ||
Full Name | Transcription factor SOX-17 | ||
Organism | Callithrix jacchus [9483] |
Cross Reference | |||
UniProt | F6W913 | UniGene | NULL |
PDB | NULL | OMIM | NULL |
KEGG | NULL | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | NULL |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
ENSCJAP00000030751 | Gene3D | G3DSA:1.10.30.10 | IPR009071 | 67 | 147 | 2.70e-34 | High mobility group box domain |
ENSCJAP00000030751 | Pfam | PF00505 | IPR009071 | 68 | 136 | 2.60e-25 | High mobility group box domain |
ENSCJAP00000030751 | Pfam | PF12067 | IPR021934 | 201 | 412 | 1.20e-43 | Sox C-terminal transactivation domain |
ENSCJAP00000030751 | ProSiteProfiles | PS50118 | IPR009071 | 68 | 136 | 0.00e-00 | High mobility group box domain |
ENSCJAP00000030751 | ProSiteProfiles | PS51516 | IPR021934 | 280 | 413 | 0.00e-00 | Sox C-terminal transactivation domain |
ENSCJAP00000030751 | SMART | SM00398 | IPR009071 | 67 | 137 | 5.00e-31 | High mobility group box domain |
ENSCJAP00000030751 | SUPERFAMILY | SSF47095 | IPR009071 | 58 | 140 | 0.00e-00 | High mobility group box domain |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
ENSCJAP00000030751 | PF12067 | 0 | Sox_C_TAD | Sox C-terminal transactivation domain |
ENSCJAP00000030751 | PF00505 | 1.7e-25 | HMG_box | HMG (high mobility group) box |
ENSCJAP00000030751 | PF09011 | 3.5e-11 | HMG_box_2 | HMG-box domain |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
ENSCJAP00000030751 | GO:0006351 | biological_process | transcription, DNA-templated |
ENSCJAP00000030751 | GO:0006355 | biological_process | regulation of transcription, DNA-templated |
ENSCJAP00000030751 | GO:0007275 | biological_process | multicellular organismal development |
ENSCJAP00000030751 | GO:0007369 | biological_process | gastrulation |
ENSCJAP00000030751 | GO:0016055 | biological_process | Wnt signaling pathway |
ENSCJAP00000030751 | GO:0045893 | biological_process | positive regulation of transcription, DNA-templated |
ENSCJAP00000030751 | GO:0045944 | biological_process | positive regulation of transcription from RNA polymerase II promoter |
ENSCJAP00000030751 | GO:0005634 | cellular_component | nucleus |
ENSCJAP00000030751 | GO:0003677 | molecular_function | DNA binding |
ENSCJAP00000030751 | GO:0008013 | molecular_function | beta-catenin binding |
ENSCJAP00000030751 | GO:0043565 | molecular_function | sequence-specific DNA binding |
Orthologs | |||||
TAXID | Organism | Gene ID | TAXID | Organism | Gene ID |
7425 | Nasonia vitripennis | 100120206 | 10224 | Saccoglossus kowalevskii | 100303486 |
13616 | Monodelphis domestica | 100030119 | 9823 | Sus scrofa | 100155811 |
7029 | Acyrthosiphon pisum | 100165234 | 8090 | Oryzias latipes | 100304455 |
61853 | Nomascus leucogenys | 100591356 | 143995 | Megachile rotundata | 100876699 |
9597 | Pan paniscus | 100969672 | 9555 | Papio anubis | 101022699 |
39432 | Saimiri boliviensis | 101053885 | 31033 | Takifugu rubripes | 101080200 |
9669 | Mustela putorius furo | 101683331 | 43179 | Ictidomys tridecemlineatus | 101966515 |
8083 | Xiphophorus maculatus | 102225699 | 59463 | Myotis lucifugus | 102427708 |
10090 | Mus musculus | 20680 | 7955 | Danio rerio | 30544 |
10116 | Rattus norvegicus | 312936 | 7227 | Drosophila melanogaster | 36575 |
9913 | Bos taurus | 534010 | 7668 | Strongylocentrotus purpuratus | 587141 |
9606 | Homo sapiens | 64321 | 9544 | Macaca mulatta | 697999 |
28377 | Anolis carolinensis | ENSACAG00000017977 | 9615 | Canis familiaris | ENSCAFG00000025327 |
7719 | Ciona intestinalis | ENSCING00000007173 | 9371 | Echinops telfairi | ENSETEG00000016915 |
9685 | Felis catus | ENSFCAG00000027132 | 69293 | Gasterosteus aculeatus | ENSGACG00000004347 |
9031 | Gallus gallus | ENSGALG00000028422 | 9595 | Gorilla gorilla | ENSGGOG00000023175 |
8049 | Gadus morhua | ENSGMOG00000005913 | 9785 | Loxodonta africana | ENSLAFG00000028829 |
9315 | Macropus eugenii | ENSMEUG00000011391 | 9103 | Meleagris gallopavo | ENSMGAG00000014195 |
30608 | Microcebus murinus | ENSMICG00000000709 | 9986 | Oryctolagus cuniculus | ENSOCUG00000012651 |
8128 | Oreochromis niloticus | ENSONIG00000015337 | 9978 | Ochotona princeps | ENSOPRG00000007021 |
9813 | Procavia capensis | ENSPCAG00000003188 | 7757 | Petromyzon marinus | ENSPMAG00000009255 |
9598 | Pan troglodytes | ENSPTRG00000028919 | 132908 | Pteropus vampyrus | ENSPVAG00000009339 |
42254 | Sorex araneus | ENSSARG00000009573 | 37347 | Tupaia belangeri | ENSTBEG00000003228 |
59729 | Taeniopygia guttata | ENSTGUG00000011034 | 30538 | Vicugna pacos | ENSVPAG00000005064 |
10029 | Cricetulus griseus | 100754082 | 34638 | Metaseiulus occidentalis | 100908412 |
7897 | Latimeria chalumnae | 102363300 | 8364 | Xenopus tropicalis | 549080 |
9646 | Ailuropoda melanoleuca | ENSAMEG00000011673 | 10141 | Cavia porcellus | ENSCPOG00000000892 |
51511 | Ciona savignyi | ENSCSAVG00000008188 | 9796 | Equus caballus | ENSECAG00000009206 |
30611 | Otolemur garnettii | ENSOGAG00000034932 | 9601 | Pongo abelii | ENSPPYG00000029608 |
99883 | Tetraodon nigroviridis | ENSTNIG00000017129 |