Basic Information | |||
Gene ID | 110648 ; ![]() ![]() | ||
Gene Name | Lmx1a | ||
Full Name | LIM homeobox transcription factor 1-alpha | ||
Organism | Mus musculus [10090] |
Cross Reference | |||
UniProt | Q9JKU8 | UniGene | Mm.330081 |
PDB | NULL | OMIM | NULL |
KEGG | mmu:110648 | UCSC | uc007dlc.1 |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | NULL |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
ENSEMBL | |||
REFSEQ | |||
REFSEQ | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
ENSMUSP00000107008 | Gene3D | G3DSA:1.10.10.60 | IPR009057 | 180 | 247 | 7.80e-24 | Homeodomain-like |
ENSMUSP00000107008 | Gene3D | G3DSA:2.10.110.10 | IPR001781 | 32 | 96 | 1.60e-15 | Zinc finger, LIM-type |
ENSMUSP00000107008 | Gene3D | G3DSA:2.10.110.10 | IPR001781 | 97 | 150 | 4.40e-15 | Zinc finger, LIM-type |
ENSMUSP00000107008 | Pfam | PF00046 | IPR001356 | 196 | 252 | 1.50e-17 | Homeobox domain |
ENSMUSP00000107008 | Pfam | PF00412 | IPR001781 | 35 | 90 | 2.50e-14 | Zinc finger, LIM-type |
ENSMUSP00000107008 | Pfam | PF00412 | IPR001781 | 94 | 151 | 1.30e-15 | Zinc finger, LIM-type |
ENSMUSP00000107008 | ProSitePatterns | PS00027 | IPR017970 | 228 | 251 | - | Homeobox, conserved site |
ENSMUSP00000107008 | ProSitePatterns | PS00478 | IPR001781 | 35 | 69 | - | Zinc finger, LIM-type |
ENSMUSP00000107008 | ProSitePatterns | PS00478 | IPR001781 | 94 | 129 | - | Zinc finger, LIM-type |
ENSMUSP00000107008 | ProSiteProfiles | PS50023 | IPR001781 | 33 | 92 | 0.00e-00 | Zinc finger, LIM-type |
ENSMUSP00000107008 | ProSiteProfiles | PS50023 | IPR001781 | 93 | 154 | 0.00e-00 | Zinc finger, LIM-type |
ENSMUSP00000107008 | ProSiteProfiles | PS50071 | IPR001356 | 193 | 253 | 0.00e-00 | Homeobox domain |
ENSMUSP00000107008 | SMART | SM00132 | IPR001781 | 34 | 85 | 1.10e-17 | Zinc finger, LIM-type |
ENSMUSP00000107008 | SMART | SM00132 | IPR001781 | 93 | 147 | 1.30e-19 | Zinc finger, LIM-type |
ENSMUSP00000107008 | SMART | SM00389 | IPR001356 | 195 | 257 | 1.00e-23 | Homeobox domain |
ENSMUSP00000107008 | SUPERFAMILY | SSF46689 | IPR009057 | 186 | 253 | 0.00e-00 | Homeodomain-like |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
ENSMUSP00000107008 | PF00412 | 2.1e-30 | LIM | LIM domain |
ENSMUSP00000107008 | PF00046 | 1.5e-17 | Homeobox | Homeobox domain |
ENSMUSP00000107008 | PF05920 | 0.00011 | Homeobox_KN | Homeobox KN domain |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
ENSMUSP00000107008 | GO:0006351 | biological_process | transcription, DNA-templated |
ENSMUSP00000107008 | GO:0006355 | biological_process | regulation of transcription, DNA-templated |
ENSMUSP00000107008 | GO:0007275 | biological_process | multicellular organismal development |
ENSMUSP00000107008 | GO:0005634 | cellular_component | nucleus |
ENSMUSP00000107008 | GO:0003700 | molecular_function | sequence-specific DNA binding transcription factor activity |
ENSMUSP00000107008 | GO:0008270 | molecular_function | zinc ion binding |
ENSMUSP00000107008 | GO:0043565 | molecular_function | sequence-specific DNA binding |
Orthologs | |||||
TAXID | Organism | Gene ID | TAXID | Organism | Gene ID |
7425 | Nasonia vitripennis | 100121564 | 10224 | Saccoglossus kowalevskii | 100328994 |
9986 | Oryctolagus cuniculus | 100338248 | 9601 | Pongo abelii | 100451412 |
400682 | Amphimedon queenslandica | 100634938 | 30195 | Bombus terrestris | 100644798 |
7463 | Apis florea | 100872112 | 34638 | Metaseiulus occidentalis | 100909136 |
9597 | Pan paniscus | 100991773 | 9555 | Papio anubis | 101014470 |
9595 | Gorilla gorilla | 101151857 | 9669 | Mustela putorius furo | 101693093 |
7029 | Acyrthosiphon pisum | 100166469 | 9483 | Callithrix jacchus | 100387212 |
9646 | Ailuropoda melanoleuca | 100475199 | 9785 | Loxodonta africana | 100658788 |
8128 | Oreochromis niloticus | 100696266 | 10141 | Cavia porcellus | 100726831 |
132113 | Bombus impatiens | 100744167 | 10029 | Cricetulus griseus | 100760113 |
143995 | Megachile rotundata | 100879464 | 39432 | Saimiri boliviensis | 101039698 |
9685 | Felis catus | 101081519 | 8090 | Oryzias latipes | 101159592 |
6239 | Caenorhabditis elegans | 181012 | 7227 | Drosophila melanogaster | 39406 |
9606 | Homo sapiens | 64211 | 28377 | Anolis carolinensis | ENSACAG00000004557 |
7719 | Ciona intestinalis | ENSCING00000013048 | 9361 | Dasypus novemcinctus | ENSDNOG00000012261 |
9365 | Erinaceus europaeus | ENSEEUG00000007978 | 9371 | Echinops telfairi | ENSETEG00000005532 |
69293 | Gasterosteus aculeatus | ENSGACG00000018323 | 9031 | Gallus gallus | ENSGALG00000000936 |
8049 | Gadus morhua | ENSGMOG00000006452 | 7897 | Latimeria chalumnae | ENSLACG00000014991 |
9103 | Meleagris gallopavo | ENSMGAG00000003603 | 59463 | Myotis lucifugus | ENSMLUG00000010463 |
61853 | Nomascus leucogenys | ENSNLEG00000014674 | 9258 | Ornithorhynchus anatinus | ENSOANG00000022733 |
9978 | Ochotona princeps | ENSOPRG00000014466 | 132908 | Pteropus vampyrus | ENSPVAG00000004265 |
9305 | Sarcophilus harrisii | ENSSHAG00000014535 | 9823 | Sus scrofa | ENSSSCG00000006329 |
43179 | Ictidomys tridecemlineatus | ENSSTOG00000005189 | 37347 | Tupaia belangeri | ENSTBEG00000014918 |
59729 | Taeniopygia guttata | ENSTGUG00000017316 | 99883 | Tetraodon nigroviridis | ENSTNIG00000018553 |
9478 | Tarsius syrichta | ENSTSYG00000012930 | 9739 | Tursiops truncatus | ENSTTRG00000003649 |
30538 | Vicugna pacos | ENSVPAG00000004576 | 8364 | Xenopus tropicalis | ENSXETG00000013183 |
8083 | Xiphophorus maculatus | ENSXMAG00000013334 | 7955 | Danio rerio | 554360 |
7668 | Strongylocentrotus purpuratus | 585635 | 9615 | Canis familiaris | 609061 |
7070 | Tribolium castaneum | 655586 | 9544 | Macaca mulatta | 694542 |
7460 | Apis mellifera | 724778 | 9598 | Pan troglodytes | 747979 |
9913 | Bos taurus | ENSBTAG00000010228 | 9358 | Choloepus hoffmanni | ENSCHOG00000013620 |
51511 | Ciona savignyi | ENSCSAVG00000000947 | 10020 | Dipodomys ordii | ENSDORG00000014036 |
9796 | Equus caballus | ENSECAG00000018605 | 9315 | Macropus eugenii | ENSMEUG00000012451 |
30608 | Microcebus murinus | ENSMICG00000009958 | 13616 | Monodelphis domestica | ENSMODG00000001270 |
30611 | Otolemur garnettii | ENSOGAG00000011315 | 9813 | Procavia capensis | ENSPCAG00000013608 |
13735 | Pelodiscus sinensis | ENSPSIG00000005639 | 10116 | Rattus norvegicus | ENSRNOG00000017019 |
31033 | Takifugu rubripes | ENSTRUG00000009042 |