Basic Information | |||
Gene ID | 100328994 | ||
Gene Name | lmx1 | ||
Full Name | PREDICTED: Lim homeobox transcription factor [Saccoglossuskowalevskii]. | ||
Organism | Saccoglossus kowalevskii [10224] |
Cross Reference | |||
UniProt | NULL | UniGene | NULL |
PDB | NULL | OMIM | NULL |
KEGG | NULL | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | NULL |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
XP_002738638 | Gene3D | G3DSA:1.10.10.60 | IPR009057 | 205 | 269 | 2.60e-22 | Homeodomain-like |
XP_002738638 | Gene3D | G3DSA:2.10.110.10 | IPR001781 | 105 | 157 | 7.50e-15 | Zinc finger, LIM-type |
XP_002738638 | Gene3D | G3DSA:2.10.110.10 | IPR001781 | 40 | 104 | 9.80e-19 | Zinc finger, LIM-type |
XP_002738638 | Pfam | PF00046 | IPR001356 | 218 | 274 | 4.80e-17 | Homeobox domain |
XP_002738638 | Pfam | PF00412 | IPR001781 | 100 | 157 | 5.40e-14 | Zinc finger, LIM-type |
XP_002738638 | Pfam | PF00412 | IPR001781 | 41 | 96 | 6.50e-17 | Zinc finger, LIM-type |
XP_002738638 | ProSitePatterns | PS00027 | IPR017970 | 250 | 273 | - | Homeobox, conserved site |
XP_002738638 | ProSitePatterns | PS00478 | IPR001781 | 100 | 135 | - | Zinc finger, LIM-type |
XP_002738638 | ProSitePatterns | PS00478 | IPR001781 | 41 | 75 | - | Zinc finger, LIM-type |
XP_002738638 | ProSiteProfiles | PS50023 | IPR001781 | 39 | 98 | 0.00e-00 | Zinc finger, LIM-type |
XP_002738638 | ProSiteProfiles | PS50023 | IPR001781 | 99 | 160 | 0.00e-00 | Zinc finger, LIM-type |
XP_002738638 | ProSiteProfiles | PS50071 | IPR001356 | 215 | 275 | 0.00e-00 | Homeobox domain |
XP_002738638 | SMART | SM00132 | IPR001781 | 40 | 91 | 2.10e-20 | Zinc finger, LIM-type |
XP_002738638 | SMART | SM00132 | IPR001781 | 99 | 153 | 1.70e-18 | Zinc finger, LIM-type |
XP_002738638 | SMART | SM00389 | IPR001356 | 217 | 279 | 7.10e-24 | Homeobox domain |
XP_002738638 | SUPERFAMILY | SSF46689 | IPR009057 | 201 | 277 | 0.00e-00 | Homeodomain-like |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
XP_002738638 | PF00412 | 2.2e-31 | LIM | LIM domain |
XP_002738638 | PF00046 | 4.8e-17 | Homeobox | Homeobox domain |
XP_002738638 | PF05920 | 4.4e-05 | Homeobox_KN | Homeobox KN domain |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
XP_002738638 | GO:0006351 | biological_process | transcription, DNA-templated |
XP_002738638 | GO:0006355 | biological_process | regulation of transcription, DNA-templated |
XP_002738638 | GO:0007275 | biological_process | multicellular organismal development |
XP_002738638 | GO:0005634 | cellular_component | nucleus |
XP_002738638 | GO:0003700 | molecular_function | sequence-specific DNA binding transcription factor activity |
XP_002738638 | GO:0008270 | molecular_function | zinc ion binding |
XP_002738638 | GO:0043565 | molecular_function | sequence-specific DNA binding |
Orthologs | |||||
TAXID | Organism | Gene ID | TAXID | Organism | Gene ID |
13616 | Monodelphis domestica | 100016205 | 7425 | Nasonia vitripennis | 100121564 |
7029 | Acyrthosiphon pisum | 100166469 | 9986 | Oryctolagus cuniculus | 100338248 |
9646 | Ailuropoda melanoleuca | 100475199 | 30195 | Bombus terrestris | 100644798 |
8128 | Oreochromis niloticus | 100696266 | 132113 | Bombus impatiens | 100744167 |
10029 | Cricetulus griseus | 100760113 | 7463 | Apis florea | 100872112 |
143995 | Megachile rotundata | 100879464 | 34638 | Metaseiulus occidentalis | 100909136 |
9597 | Pan paniscus | 100984491 | 9555 | Papio anubis | 101014470 |
39432 | Saimiri boliviensis | 101047214 | 9685 | Felis catus | 101086098 |
8090 | Oryzias latipes | 101159592 | 9669 | Mustela putorius furo | 101686194 |
13735 | Pelodiscus sinensis | 102445048 | 10090 | Mus musculus | 110648 |
7227 | Drosophila melanogaster | 39406 | 7668 | Strongylocentrotus purpuratus | 585635 |
9615 | Canis familiaris | 609061 | 7070 | Tribolium castaneum | 655586 |
7460 | Apis mellifera | 724778 | 28377 | Anolis carolinensis | ENSACAG00000004557 |
9913 | Bos taurus | ENSBTAG00000010228 | 7719 | Ciona intestinalis | ENSCING00000013048 |
9483 | Callithrix jacchus | ENSCJAG00000007071 | 10141 | Cavia porcellus | ENSCPOG00000023429 |
51511 | Ciona savignyi | ENSCSAVG00000000947 | 7955 | Danio rerio | ENSDARG00000019306 |
9361 | Dasypus novemcinctus | ENSDNOG00000012261 | 10020 | Dipodomys ordii | ENSDORG00000014036 |
9796 | Equus caballus | ENSECAG00000018605 | 9365 | Erinaceus europaeus | ENSEEUG00000007978 |
9371 | Echinops telfairi | ENSETEG00000005532 | 69293 | Gasterosteus aculeatus | ENSGACG00000018323 |
9031 | Gallus gallus | ENSGALG00000000936 | 8049 | Gadus morhua | ENSGMOG00000006452 |
7897 | Latimeria chalumnae | ENSLACG00000015722 | 9785 | Loxodonta africana | ENSLAFG00000015481 |
9315 | Macropus eugenii | ENSMEUG00000012451 | 9103 | Meleagris gallopavo | ENSMGAG00000003603 |
9544 | Macaca mulatta | ENSMMUG00000002236 | 61853 | Nomascus leucogenys | ENSNLEG00000017412 |
30611 | Otolemur garnettii | ENSOGAG00000001158 | 9978 | Ochotona princeps | ENSOPRG00000014466 |
9598 | Pan troglodytes | ENSPTRG00000021377 | 132908 | Pteropus vampyrus | ENSPVAG00000004265 |
10116 | Rattus norvegicus | ENSRNOG00000017019 | 9305 | Sarcophilus harrisii | ENSSHAG00000014535 |
9823 | Sus scrofa | ENSSSCG00000005606 | 43179 | Ictidomys tridecemlineatus | ENSSTOG00000026973 |
59729 | Taeniopygia guttata | ENSTGUG00000017316 | 99883 | Tetraodon nigroviridis | ENSTNIG00000018553 |
31033 | Takifugu rubripes | ENSTRUG00000009042 | 9478 | Tarsius syrichta | ENSTSYG00000012930 |
9739 | Tursiops truncatus | ENSTTRG00000013199 | 30538 | Vicugna pacos | ENSVPAG00000004576 |
8364 | Xenopus tropicalis | ENSXETG00000013183 | 8083 | Xiphophorus maculatus | ENSXMAG00000013334 |
9595 | Gorilla gorilla | 101151857 | 9813 | Procavia capensis | ENSPCAG00000013608 |