Basic Information | |||
Gene ID | 554360 | ||
Gene Name | lmx1bb; lmx1b.1 | ||
Full Name | LIM homeobox transcription factor 1, beta 1 | ||
Organism | Danio rerio [7955] |
Cross Reference | |||
UniProt | Q4L1M6 | UniGene | Dr.108678 |
PDB | NULL | OMIM | NULL |
KEGG | dre:554360 | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | 7955.ENSDARP00000070894 |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
ENSEMBL | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
ENSDARP00000104973 | Gene3D | G3DSA:1.10.10.60 | IPR009057 | 180 | 246 | 9.00e-24 | Homeodomain-like |
ENSDARP00000104973 | Gene3D | G3DSA:2.10.110.10 | IPR001781 | 32 | 95 | 3.40e-17 | Zinc finger, LIM-type |
ENSDARP00000104973 | Gene3D | G3DSA:2.10.110.10 | IPR001781 | 96 | 148 | 1.10e-15 | Zinc finger, LIM-type |
ENSDARP00000104973 | Pfam | PF00046 | IPR001356 | 195 | 251 | 1.40e-17 | Homeobox domain |
ENSDARP00000104973 | Pfam | PF00412 | IPR001781 | 33 | 88 | 3.80e-17 | Zinc finger, LIM-type |
ENSDARP00000104973 | Pfam | PF00412 | IPR001781 | 92 | 149 | 2.50e-16 | Zinc finger, LIM-type |
ENSDARP00000104973 | ProSitePatterns | PS00027 | IPR017970 | 227 | 250 | - | Homeobox, conserved site |
ENSDARP00000104973 | ProSitePatterns | PS00478 | IPR001781 | 33 | 67 | - | Zinc finger, LIM-type |
ENSDARP00000104973 | ProSitePatterns | PS00478 | IPR001781 | 92 | 127 | - | Zinc finger, LIM-type |
ENSDARP00000104973 | ProSiteProfiles | PS50023 | IPR001781 | 31 | 89 | 0.00e-00 | Zinc finger, LIM-type |
ENSDARP00000104973 | ProSiteProfiles | PS50023 | IPR001781 | 90 | 152 | 0.00e-00 | Zinc finger, LIM-type |
ENSDARP00000104973 | ProSiteProfiles | PS50071 | IPR001356 | 192 | 252 | 0.00e-00 | Homeobox domain |
ENSDARP00000104973 | SMART | SM00132 | IPR001781 | 32 | 83 | 1.90e-20 | Zinc finger, LIM-type |
ENSDARP00000104973 | SMART | SM00132 | IPR001781 | 91 | 145 | 3.90e-20 | Zinc finger, LIM-type |
ENSDARP00000104973 | SMART | SM00389 | IPR001356 | 194 | 256 | 1.00e-23 | Homeobox domain |
ENSDARP00000104973 | SUPERFAMILY | SSF46689 | IPR009057 | 185 | 252 | 0.00e-00 | Homeodomain-like |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
ENSDARP00000104973 | PF00412 | 7.2e-34 | LIM | LIM domain |
ENSDARP00000104973 | PF00046 | 4.3e-18 | Homeobox | Homeobox domain |
ENSDARP00000104973 | PF05920 | 0.00012 | Homeobox_KN | Homeobox KN domain |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
ENSDARP00000104973 | GO:0006351 | biological_process | transcription, DNA-templated |
ENSDARP00000104973 | GO:0007275 | biological_process | multicellular organismal development |
ENSDARP00000104973 | GO:0005634 | cellular_component | nucleus |
ENSDARP00000104973 | GO:0003700 | molecular_function | sequence-specific DNA binding transcription factor activity |
ENSDARP00000104973 | GO:0008270 | molecular_function | zinc ion binding |
ENSDARP00000104973 | GO:0043565 | molecular_function | sequence-specific DNA binding |
Orthologs | |||||
TAXID | Organism | Gene ID | TAXID | Organism | Gene ID |
9986 | Oryctolagus cuniculus | 100338248 | 30195 | Bombus terrestris | 100644798 |
7463 | Apis florea | 100872112 | 9597 | Pan paniscus | 100984491 |
39432 | Saimiri boliviensis | 101047214 | 9595 | Gorilla gorilla | 101151857 |
9669 | Mustela putorius furo | 101686194 | 13616 | Monodelphis domestica | 100016205 |
7425 | Nasonia vitripennis | 100121564 | 7029 | Acyrthosiphon pisum | 100166469 |
9646 | Ailuropoda melanoleuca | 100475199 | 8128 | Oreochromis niloticus | 100696266 |
132113 | Bombus impatiens | 100744167 | 10029 | Cricetulus griseus | 100760113 |
143995 | Megachile rotundata | 100879464 | 9555 | Papio anubis | 101016885 |
9685 | Felis catus | 101086098 | 8090 | Oryzias latipes | 101159592 |
10090 | Mus musculus | 110648 | 7070 | Tribolium castaneum | 655586 |
28377 | Anolis carolinensis | ENSACAG00000004557 | 9358 | Choloepus hoffmanni | ENSCHOG00000013620 |
7719 | Ciona intestinalis | ENSCING00000013048 | 9483 | Callithrix jacchus | ENSCJAG00000007071 |
10141 | Cavia porcellus | ENSCPOG00000023429 | 51511 | Ciona savignyi | ENSCSAVG00000000947 |
9361 | Dasypus novemcinctus | ENSDNOG00000012261 | 10020 | Dipodomys ordii | ENSDORG00000002371 |
9365 | Erinaceus europaeus | ENSEEUG00000007978 | 9031 | Gallus gallus | ENSGALG00000000936 |
8049 | Gadus morhua | ENSGMOG00000006452 | 7897 | Latimeria chalumnae | ENSLACG00000016220 |
9785 | Loxodonta africana | ENSLAFG00000015481 | 9103 | Meleagris gallopavo | ENSMGAG00000003603 |
30608 | Microcebus murinus | ENSMICG00000010287 | 59463 | Myotis lucifugus | ENSMLUG00000010463 |
9544 | Macaca mulatta | ENSMMUG00000002236 | 61853 | Nomascus leucogenys | ENSNLEG00000017412 |
30611 | Otolemur garnettii | ENSOGAG00000001158 | 9598 | Pan troglodytes | ENSPTRG00000021377 |
132908 | Pteropus vampyrus | ENSPVAG00000004265 | 9305 | Sarcophilus harrisii | ENSSHAG00000014535 |
9823 | Sus scrofa | ENSSSCG00000005606 | 9478 | Tarsius syrichta | ENSTSYG00000012930 |
9739 | Tursiops truncatus | ENSTTRG00000003649 | 30538 | Vicugna pacos | ENSVPAG00000004576 |
8364 | Xenopus tropicalis | ENSXETG00000013183 | 7668 | Strongylocentrotus purpuratus | 585635 |
7460 | Apis mellifera | 724778 | 9913 | Bos taurus | ENSBTAG00000010228 |
9615 | Canis familiaris | ENSCAFG00000030076 | 9796 | Equus caballus | ENSECAG00000018605 |
69293 | Gasterosteus aculeatus | ENSGACG00000012015 | 9315 | Macropus eugenii | ENSMEUG00000012451 |
9978 | Ochotona princeps | ENSOPRG00000015599 | 9813 | Procavia capensis | ENSPCAG00000013608 |
13735 | Pelodiscus sinensis | ENSPSIG00000005200 | 10116 | Rattus norvegicus | ENSRNOG00000017019 |
43179 | Ictidomys tridecemlineatus | ENSSTOG00000026973 | 59729 | Taeniopygia guttata | ENSTGUG00000007409 |
99883 | Tetraodon nigroviridis | ENSTNIG00000018979 | 31033 | Takifugu rubripes | ENSTRUG00000009042 |
8083 | Xiphophorus maculatus | ENSXMAG00000000206 |
Paralogs | |||
ENSDARG00000019306 |