Basic Information
Gene ID 554360
Gene Name lmx1bb; lmx1b.1
Full Name LIM homeobox transcription factor 1, beta 1
Organism Danio rerio [7955]

Cross Reference
UniProt Q4L1M6 UniGene Dr.108678
PDB NULL OMIM NULL
KEGG dre:554360 UCSC NULL

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING 7955.ENSDARP00000070894

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
ENSEMBL
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
ENSDARP00000104973 Gene3D G3DSA:1.10.10.60 IPR009057 180 246 9.00e-24 Homeodomain-like
ENSDARP00000104973 Gene3D G3DSA:2.10.110.10 IPR001781 32 95 3.40e-17 Zinc finger, LIM-type
ENSDARP00000104973 Gene3D G3DSA:2.10.110.10 IPR001781 96 148 1.10e-15 Zinc finger, LIM-type
ENSDARP00000104973 Pfam PF00046 IPR001356 195 251 1.40e-17 Homeobox domain
ENSDARP00000104973 Pfam PF00412 IPR001781 33 88 3.80e-17 Zinc finger, LIM-type
ENSDARP00000104973 Pfam PF00412 IPR001781 92 149 2.50e-16 Zinc finger, LIM-type
ENSDARP00000104973 ProSitePatterns PS00027 IPR017970 227 250 - Homeobox, conserved site
ENSDARP00000104973 ProSitePatterns PS00478 IPR001781 33 67 - Zinc finger, LIM-type
ENSDARP00000104973 ProSitePatterns PS00478 IPR001781 92 127 - Zinc finger, LIM-type
ENSDARP00000104973 ProSiteProfiles PS50023 IPR001781 31 89 0.00e-00 Zinc finger, LIM-type
ENSDARP00000104973 ProSiteProfiles PS50023 IPR001781 90 152 0.00e-00 Zinc finger, LIM-type
ENSDARP00000104973 ProSiteProfiles PS50071 IPR001356 192 252 0.00e-00 Homeobox domain
ENSDARP00000104973 SMART SM00132 IPR001781 32 83 1.90e-20 Zinc finger, LIM-type
ENSDARP00000104973 SMART SM00132 IPR001781 91 145 3.90e-20 Zinc finger, LIM-type
ENSDARP00000104973 SMART SM00389 IPR001356 194 256 1.00e-23 Homeobox domain
ENSDARP00000104973 SUPERFAMILY SSF46689 IPR009057 185 252 0.00e-00 Homeodomain-like

Pfam Annotation
Protein Pfam ID E.value Name Description
ENSDARP00000104973 PF00412 7.2e-34 LIM LIM domain
ENSDARP00000104973 PF00046 4.3e-18 Homeobox Homeobox domain
ENSDARP00000104973 PF05920 0.00012 Homeobox_KN Homeobox KN domain

Gene Ontology Annotation
Protein Entry Name Space Description
ENSDARP00000104973 GO:0006351 biological_process transcription, DNA-templated
ENSDARP00000104973 GO:0007275 biological_process multicellular organismal development
ENSDARP00000104973 GO:0005634 cellular_component nucleus
ENSDARP00000104973 GO:0003700 molecular_function sequence-specific DNA binding transcription factor activity
ENSDARP00000104973 GO:0008270 molecular_function zinc ion binding
ENSDARP00000104973 GO:0043565 molecular_function sequence-specific DNA binding

Orthologs
TAXID Organism Gene ID TAXID Organism Gene ID
9986 Oryctolagus cuniculus 100338248 30195 Bombus terrestris 100644798
7463 Apis florea 100872112 9597 Pan paniscus 100984491
39432 Saimiri boliviensis 101047214 9595 Gorilla gorilla 101151857
9669 Mustela putorius furo 101686194 13616 Monodelphis domestica 100016205
7425 Nasonia vitripennis 100121564 7029 Acyrthosiphon pisum 100166469
9646 Ailuropoda melanoleuca 100475199 8128 Oreochromis niloticus 100696266
132113 Bombus impatiens 100744167 10029 Cricetulus griseus 100760113
143995 Megachile rotundata 100879464 9555 Papio anubis 101016885
9685 Felis catus 101086098 8090 Oryzias latipes 101159592
10090 Mus musculus 110648 7070 Tribolium castaneum 655586
28377 Anolis carolinensis ENSACAG00000004557 9358 Choloepus hoffmanni ENSCHOG00000013620
7719 Ciona intestinalis ENSCING00000013048 9483 Callithrix jacchus ENSCJAG00000007071
10141 Cavia porcellus ENSCPOG00000023429 51511 Ciona savignyi ENSCSAVG00000000947
9361 Dasypus novemcinctus ENSDNOG00000012261 10020 Dipodomys ordii ENSDORG00000002371
9365 Erinaceus europaeus ENSEEUG00000007978 9031 Gallus gallus ENSGALG00000000936
8049 Gadus morhua ENSGMOG00000006452 7897 Latimeria chalumnae ENSLACG00000016220
9785 Loxodonta africana ENSLAFG00000015481 9103 Meleagris gallopavo ENSMGAG00000003603
30608 Microcebus murinus ENSMICG00000010287 59463 Myotis lucifugus ENSMLUG00000010463
9544 Macaca mulatta ENSMMUG00000002236 61853 Nomascus leucogenys ENSNLEG00000017412
30611 Otolemur garnettii ENSOGAG00000001158 9598 Pan troglodytes ENSPTRG00000021377
132908 Pteropus vampyrus ENSPVAG00000004265 9305 Sarcophilus harrisii ENSSHAG00000014535
9823 Sus scrofa ENSSSCG00000005606 9478 Tarsius syrichta ENSTSYG00000012930
9739 Tursiops truncatus ENSTTRG00000003649 30538 Vicugna pacos ENSVPAG00000004576
8364 Xenopus tropicalis ENSXETG00000013183 7668 Strongylocentrotus purpuratus 585635
7460 Apis mellifera 724778 9913 Bos taurus ENSBTAG00000010228
9615 Canis familiaris ENSCAFG00000030076 9796 Equus caballus ENSECAG00000018605
69293 Gasterosteus aculeatus ENSGACG00000012015 9315 Macropus eugenii ENSMEUG00000012451
9978 Ochotona princeps ENSOPRG00000015599 9813 Procavia capensis ENSPCAG00000013608
13735 Pelodiscus sinensis ENSPSIG00000005200 10116 Rattus norvegicus ENSRNOG00000017019
43179 Ictidomys tridecemlineatus ENSSTOG00000026973 59729 Taeniopygia guttata ENSTGUG00000007409
99883 Tetraodon nigroviridis ENSTNIG00000018979 31033 Takifugu rubripes ENSTRUG00000009042
8083 Xiphophorus maculatus ENSXMAG00000000206

Paralogs
ENSDARG00000019306