Date:
02/07/04 08:31
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Submitted by:
dmb
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Assigned to:
liwz
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Category:
Clustering
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Priority:
9
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Ticket group:
Serious
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Resolution:
Unset
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Summary:
Handling X character (mask) in sequences
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Original submission:
CD-HIT treets x as if it were a valid amino acid, allowing spurious matches between low-complexity masked sequenecs for example.
For an example of this bug in action, see
http://www.bioinformatics.org/ftp/cd-hit/TEST_RESULTS/Aug-2003/X-character-test/
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Followups
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Comment
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Date
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By
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I reorganized again (sorry!), this time (finally?) you need to look here...
http://ftp.bioinformatics.org/pub/cd-hit/TEST_RESULTS/Truncated-Sequences-Test/
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05/24/05 11:30
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dmb
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Sorry - I reorganized...
http://bioinformatics.org/ftp/cd-hit/Aug-2003/TEST_RESULTS/X-character-test/
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02/09/04 20:27
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dmb
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No results for "Dependent on ticket"
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No results for "Dependent on Task"
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No other tickets are dependent on this ticket
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Ticket change history
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Field
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Old value
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Date
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By
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status_id
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Open |
07/14/11 01:19
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liwz
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close_date
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12/31/69 19:00 |
07/14/11 01:19
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liwz
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assigned_to
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vijaya_p5 |
05/24/05 11:15
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dmb
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status_id
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Unset |
08/19/04 07:30
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dmb
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assigned_to
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unset |
08/13/04 11:06
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dmb
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priority
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5 |
02/09/04 20:31
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dmb
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