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  • CD-HIT: Sequence clustering software - Support tickets

    Submit | Open tickets | Closed tickets

    [ Ticket #184 ] Documents lack details!
    Date:
    05/21/04 06:13
    Submitted by:
    dmb
    Assigned to:
    dmb
    Category:
    Documentation
    Priority:
    8
    Ticket group:
    Serious
    Resolution:
    Resolved
    Summary:
    Documents lack details!
    Original submission:

    1) Install instructions missing!
    It may be basic to even a linux beginner, but we all remember our first install experience... We need to have some instructions on how to untar / unzip / make and install the package.

    2) Results file description missing!
    fomat of results file should be described, and results file parser included. Would Uniprot give us their nice XML format parser?

    3) Parameters not described fully!
    we need to parasie the original research papers.

    4) Not much is said about why cd-hit and mcd-hit are included in the distribution.

    5) I should add my perl function for picking wordlength and program given a sequence identity threshold.
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    Ticket change history
    Field Old value Date By
    status_id Open 05/16/11 00:37 liwz
    resolution_id Unset 05/16/11 00:37 liwz
    close_date 12/31/69 19:00 05/16/11 00:37 liwz
    status_id Unset 08/19/04 07:33 dmb
    priority 5 08/19/04 07:33 dmb
    assigned_to unset 08/13/04 11:05 dmb

     

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