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User profile
Lukasz Pawel Kozlowski
[Direct message]Scientist working in computational biology (proteomics, protein structural biology, NGS, bioinformatics, etc.), moonlighting in scientometrics.
Current address
Banacha 2
Warsaw, Mazovian
Poland
Education
Institute of Biochemistry and Biophysics of the Polish Academy of Science
2008 — 2013
Jan Kochanowski University of Humanities and Sciences
2005 — 2007
Jan Kochanowski University of Humanities and Sciences
2004 — 2006
Experience
Institute of Informatics, University of Warsaw
2018
Solid Scientometrics
2018
Max Planck Institute for Biophysical Chemistry, Goettingen, Germany
2015 — 2017
Skills
- machine learning: deep learning, ANN, SVM, genetic algorithms, optimisation
- programming languages: PYTHON, R, C++, C, Java, shell
- databases: MySQL, PostgreSQL
- Internet: HTML, PHP, Zope, Django, Apache, JavaScript
- in-depth knowledge of bioinformatics programs (e.g. BLAST, HHSearch, ClustalW, MAFFT, UCSD Chimera, VMD, Modeller, MEME, and few hundred others)
Activities
- International Society for Computational Biology (ISCB)
- Polish Bioinformatics Society (PTBI)
- Polish Biochemical Society (PTBioch)
- Society for Bioinformatics in Northern Europe (SocBiN)
Interests
- development of bioinformatics tools for protein and RNA
- next-generation sequencing (NGS) data analysis
- proteomics
- protein structure modeling
- intrinsic protein disorder and its function in biological systems
References
Kozlowski LP, Bujnicki JM MetaDisorder: a meta-server for the prediction of intrinsic disorder in proteins. BMC Bioinformatics 2012; 13:111. doi: 10.1186/1471-2105-13-11
Kozlowski LP IPC - Isoelectric Point Calculator. Biology Direct 2016; 11:55. doi: 10.1186/s13062-016-0159-9
Kozlowski LP Proteome-pI: Proteome Isoelectric Point Database. Nucleic Acids Res. 2017; 45 (D1): D1112-D1116
Kozlowski LP IPC 2.0 -- prediction of isoelectric point and pKa dissociation constants. Nucleic Acids Res. 2021; doi: 10.1093/nar/gkab295
Erijman A, Kozlowski L, et al. A High-Throughput Screen for Transcription Activation Domains Reveals Their Sequence Features and Permits Prediction by Deep Learning. Molecular Cell; 78, 1--13. doi: 10.1016/j.molcel.2020.04.020
Other
Personal website: http://bioinformatics.netmark.pl/
URL to updated CV: http://goo.gl/JgTHzC
Groups (0)
News items (6)
| News & Commentary |
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Resources: Proteome-pI 2.0 -- Proteome Isoelectric Point Database 2.0
Submitted by Lukasz Pawel Kozlowski; posted on Tuesday, November 2, 2021 |
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Software: IPC 2.0: prediction of isoelectric point and pKa dissociation constants
Submitted by Lukasz Pawel Kozlowski; posted on Thursday, July 8, 2021 |
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Resources: fCite: A fractional citation tool to quantify an individual's scientific research output
Submitted by Lukasz Pawel Kozlowski; posted on Monday, September 23, 2019 |
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Resources: IPC: Isoelectric Point Calculator
Submitted by Lukasz Pawel Kozlowski; posted on Sunday, June 12, 2016 (1 comment) |
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URL: Calculation of protein isoelectric point
Submitted by Lukasz Pawel Kozlowski; posted on Thursday, April 12, 2007 |
Forum messages (1)
| News & Commentary |
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(no subject)
Submitted by Lukasz Pawel Kozlowski;
posted on Thursday, May 27, 2021
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