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  • Lukasz Pawel Kozlowski Lukasz Pawel Kozlowski [Send a message]
    Member since: April 10, 2007
    Scientist working in computational biology (proteomics, protein structural biology, NGS, bioinformatics, etc.), moonlighting in scientometrics.
    News items (5)
    News & Commentary
    Resources: IPC: Isoelectric Point Calculator
    Submitted by Lukasz Pawel Kozlowski; posted on Sunday, June 12, 2016 (1 comment)
    URL: gp2fasta service
    Submitted by Lukasz Pawel Kozlowski; posted on Tuesday, August 07, 2007
    URL: Calculation of protein isoelectric point
    Submitted by Lukasz Pawel Kozlowski; posted on Thursday, April 12, 2007
    Forum messages (1)
    News & Commentary
    (no subject)
    Submitted by Lukasz Pawel Kozlowski; posted on Thursday, May 27, 2021
    Curriculum vitae

    Current address:

    Institute of Informatics, University of Warsaw
    Banacha 2
    Warsaw, Mazovian
    Poland

    Education:

    Ph.D. in Biochemistry (Bioinformatics)
    Institute of Biochemistry and Biophysics of the Polish Academy of Science
    2008 - 2013
    BSc in Computer Science
    Jan Kochanowski University of Humanities and Sciences
    2005 - 2007
    MSc in Biology (Genetics)
    Jan Kochanowski University of Humanities and Sciences
    2004 - 2006

    Experience:

    Assistant Professor Institute of Informatics, University of Warsaw 2018 -
    CEO & Owner Solid Scientometrics 2018 -
    Postdoctoral Researcher Max Planck Institute for Biophysical Chemistry, Goettingen, Germany 2015 - 2017

    Skills:

    machine learning: deep learning, ANN, SVM, genetic algorithms, optimisation

    programming languages: PYTHON, R, C++, C, Java, shell

    databases: MySQL, PostgreSQL

    Internet: HTML, PHP, Zope, Django, Apache, JavaScript

    in-depth knowledge of bioinformatics programs (e.g. BLAST, HHSearch, ClustalW, MAFFT, UCSD Chimera, VMD, Modeller, MEME, and few hundred others)

    Activities:

    International Society for Computational Biology (ISCB)

    Polish Bioinformatics Society (PTBI)

    Polish Biochemical Society (PTBioch)

    Society for Bioinformatics in Northern Europe (SocBiN)

    Interests:

    development of bioinformatics tools for protein and RNA

    next-generation sequencing (NGS) data analysis

    proteomics

    protein structure modeling

    intrinsic protein disorder and its function in biological systems

    References:

    Kozlowski LP, Bujnicki JM MetaDisorder: a meta-server for the prediction of intrinsic disorder in proteins. BMC Bioinformatics 2012; 13:111. doi: 10.1186/1471-2105-13-11

    Kozlowski LP IPC - Isoelectric Point Calculator. Biology Direct 2016; 11:55. doi: 10.1186/s13062-016-0159-9

    Kozlowski LP Proteome-pI: Proteome Isoelectric Point Database. Nucleic Acids Res. 2017; 45 (D1): D1112-D1116

    Kozlowski LP IPC 2.0 -- prediction of isoelectric point and pKa dissociation constants. Nucleic Acids Res. 2021; doi: 10.1093/nar/gkab295

    Erijman A, Kozlowski L, et al. A High-Throughput Screen for Transcription Activation Domains Reveals Their Sequence Features and Permits Prediction by Deep Learning. Molecular Cell; 78, 1--13. doi: 10.1016/j.molcel.2020.04.020

    Other:

    Personal website: http://bioinformatics.netmark.pl/

    URL to updated CV: http://goo.gl/JgTHzC

     

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