Basic Information | |||
Gene ID | 102454613 | ||
Gene Name | PRDM1 | ||
Full Name | Uncharacterized protein | ||
Organism | Pelodiscus sinensis [13735] |
Cross Reference | |||
UniProt | K7F3X2 | UniGene | NULL |
PDB | NULL | OMIM | NULL |
KEGG | NULL | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | NULL |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
REFSEQ | |||
REFSEQ | |||
REFSEQ | |||
REFSEQ | |||
REFSEQ | |||
REFSEQ | |||
REFSEQ | |||
REFSEQ | |||
REFSEQ | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
ENSPSIP00000002732 | Gene3D | G3DSA:3.30.160.60 | IPR013087 | 537 | 566 | 9.80e-15 | Zinc finger C2H2-type/integrase DNA-binding domain |
ENSPSIP00000002732 | Gene3D | G3DSA:3.30.160.60 | IPR013087 | 567 | 586 | 5.40e-13 | Zinc finger C2H2-type/integrase DNA-binding domain |
ENSPSIP00000002732 | Gene3D | G3DSA:3.30.160.60 | IPR013087 | 587 | 612 | 6.70e-16 | Zinc finger C2H2-type/integrase DNA-binding domain |
ENSPSIP00000002732 | Gene3D | G3DSA:3.30.160.60 | IPR013087 | 613 | 639 | 2.80e-10 | Zinc finger C2H2-type/integrase DNA-binding domain |
ENSPSIP00000002732 | Gene3D | G3DSA:3.30.160.60 | IPR013087 | 640 | 669 | 2.50e-06 | Zinc finger C2H2-type/integrase DNA-binding domain |
ENSPSIP00000002732 | Pfam | PF00856 | IPR001214 | 64 | 164 | 5.80e-08 | SET domain |
ENSPSIP00000002732 | PIRSF | PIRSF013212 | IPR016608 | 1 | 787 | 0.00e-00 | PR-domain zinc finger protein PRDM1 |
ENSPSIP00000002732 | ProSitePatterns | PS00028 | IPR007087 | 539 | 559 | - | Zinc finger, C2H2 |
ENSPSIP00000002732 | ProSitePatterns | PS00028 | IPR007087 | 567 | 587 | - | Zinc finger, C2H2 |
ENSPSIP00000002732 | ProSitePatterns | PS00028 | IPR007087 | 595 | 615 | - | Zinc finger, C2H2 |
ENSPSIP00000002732 | ProSitePatterns | PS00028 | IPR007087 | 623 | 643 | - | Zinc finger, C2H2 |
ENSPSIP00000002732 | ProSiteProfiles | PS50157 | IPR007087 | 537 | 564 | 0.00e-00 | Zinc finger, C2H2 |
ENSPSIP00000002732 | ProSiteProfiles | PS50157 | IPR007087 | 565 | 592 | 0.00e-00 | Zinc finger, C2H2 |
ENSPSIP00000002732 | ProSiteProfiles | PS50157 | IPR007087 | 593 | 620 | 0.00e-00 | Zinc finger, C2H2 |
ENSPSIP00000002732 | ProSiteProfiles | PS50157 | IPR007087 | 621 | 648 | 0.00e-00 | Zinc finger, C2H2 |
ENSPSIP00000002732 | ProSiteProfiles | PS50280 | IPR001214 | 49 | 165 | 0.00e-00 | SET domain |
ENSPSIP00000002732 | SMART | SM00317 | IPR001214 | 50 | 171 | 6.60e-22 | SET domain |
ENSPSIP00000002732 | SMART | SM00355 | IPR015880 | 537 | 559 | 7.60e-07 | Zinc finger, C2H2-like |
ENSPSIP00000002732 | SMART | SM00355 | IPR015880 | 565 | 587 | 1.30e-05 | Zinc finger, C2H2-like |
ENSPSIP00000002732 | SMART | SM00355 | IPR015880 | 593 | 615 | 2.50e-05 | Zinc finger, C2H2-like |
ENSPSIP00000002732 | SMART | SM00355 | IPR015880 | 621 | 643 | 7.80e-05 | Zinc finger, C2H2-like |
ENSPSIP00000002732 | SMART | SM00355 | IPR015880 | 649 | 669 | 5.20e-01 | Zinc finger, C2H2-like |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
ENSPSIP00000002732 | PF13465 | 6.1e-28 | zf-H2C2_2 | Zinc-finger double domain |
ENSPSIP00000002732 | PF00096 | 1.1e-15 | zf-C2H2 | Zinc finger, C2H2 type |
ENSPSIP00000002732 | PF13894 | 1.6e-13 | zf-C2H2_4 | C2H2-type zinc finger |
ENSPSIP00000002732 | PF00856 | 9.3e-09 | SET | SET domain |
ENSPSIP00000002732 | PF13912 | 1.9e-05 | zf-C2H2_6 | C2H2-type zinc finger |
ENSPSIP00000002732 | PF12171 | 6.2e-05 | zf-C2H2_jaz | Zinc-finger double-stranded RNA-binding |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
ENSPSIP00000002732 | GO:0006351 | biological_process | transcription, DNA-templated |
ENSPSIP00000002732 | GO:0006355 | biological_process | regulation of transcription, DNA-templated |
ENSPSIP00000002732 | GO:0005634 | cellular_component | nucleus |
ENSPSIP00000002732 | GO:0003677 | molecular_function | DNA binding |
ENSPSIP00000002732 | GO:0046872 | molecular_function | metal ion binding |
Orthologs | |||||
TAXID | Organism | Gene ID | TAXID | Organism | Gene ID |
9796 | Equus caballus | 100071967 | 7070 | Tribolium castaneum | 100142159 |
9823 | Sus scrofa | 100154284 | 7029 | Acyrthosiphon pisum | 100159482 |
61853 | Nomascus leucogenys | 100585120 | 8128 | Oreochromis niloticus | 100706221 |
143995 | Megachile rotundata | 100877382 | 34638 | Metaseiulus occidentalis | 100906146 |
30611 | Otolemur garnettii | 100943698 | 9597 | Pan paniscus | 100979416 |
39432 | Saimiri boliviensis | 101033194 | 9595 | Gorilla gorilla | 101142019 |
9669 | Mustela putorius furo | 101675818 | 43179 | Ictidomys tridecemlineatus | 101977297 |
7425 | Nasonia vitripennis | 100123469 | 9601 | Pongo abelii | 100452654 |
30195 | Bombus terrestris | 100650488 | 132113 | Bombus impatiens | 100741638 |
10029 | Cricetulus griseus | 100759446 | 9555 | Papio anubis | 101009742 |
10116 | Rattus norvegicus | 309871 | 7955 | Danio rerio | 323473 |
9031 | Gallus gallus | 445340 | 9606 | Homo sapiens | 639 |
28377 | Anolis carolinensis | ENSACAG00000005496 | 9646 | Ailuropoda melanoleuca | ENSAMEG00000001482 |
10020 | Dipodomys ordii | ENSDORG00000014237 | 9365 | Erinaceus europaeus | ENSEEUG00000013222 |
9371 | Echinops telfairi | ENSETEG00000019669 | 69293 | Gasterosteus aculeatus | ENSGACG00000009358 |
9785 | Loxodonta africana | ENSLAFG00000013436 | 9315 | Macropus eugenii | ENSMEUG00000000043 |
30608 | Microcebus murinus | ENSMICG00000010329 | 9258 | Ornithorhynchus anatinus | ENSOANG00000004176 |
9986 | Oryctolagus cuniculus | ENSOCUG00000016978 | 9978 | Ochotona princeps | ENSOPRG00000006055 |
9813 | Procavia capensis | ENSPCAG00000009179 | 132908 | Pteropus vampyrus | ENSPVAG00000011732 |
42254 | Sorex araneus | ENSSARG00000004079 | 9478 | Tarsius syrichta | ENSTSYG00000011666 |
30538 | Vicugna pacos | ENSVPAG00000011363 | 8364 | Xenopus tropicalis | ENSXETG00000008674 |
8083 | Xiphophorus maculatus | ENSXMAG00000013351 | 10090 | Mus musculus | 12142 |
7227 | Drosophila melanogaster | 38638 | 7460 | Apis mellifera | 408295 |
9615 | Canis familiaris | 481947 | 7668 | Strongylocentrotus purpuratus | 751833 |
9913 | Bos taurus | ENSBTAG00000009631 | 9358 | Choloepus hoffmanni | ENSCHOG00000011220 |
9483 | Callithrix jacchus | ENSCJAG00000009793 | 10141 | Cavia porcellus | ENSCPOG00000014064 |
51511 | Ciona savignyi | ENSCSAVG00000011146 | 9685 | Felis catus | ENSFCAG00000010755 |
8049 | Gadus morhua | ENSGMOG00000009730 | 9103 | Meleagris gallopavo | ENSMGAG00000013524 |
59463 | Myotis lucifugus | ENSMLUG00000014085 | 9544 | Macaca mulatta | ENSMMUG00000003420 |
13616 | Monodelphis domestica | ENSMODG00000028134 | 8090 | Oryzias latipes | ENSORLG00000010025 |
7757 | Petromyzon marinus | ENSPMAG00000003606 | 9598 | Pan troglodytes | ENSPTRG00000000383 |
37347 | Tupaia belangeri | ENSTBEG00000004089 | 59729 | Taeniopygia guttata | ENSTGUG00000012204 |
99883 | Tetraodon nigroviridis | ENSTNIG00000012300 | 31033 | Takifugu rubripes | ENSTRUG00000000404 |
9739 | Tursiops truncatus | ENSTTRG00000012894 |