Basic Information | |||
Gene ID | 309871 ; Check Expression Profles ; Check TFs & Targets Binding | ||
Gene Name | Prdm1 | ||
Full Name | Protein Prdm1 | ||
Organism | Rattus norvegicus [10116] |
Cross Reference | |||
UniProt | D4A1S2 | UniGene | Rn.8012 |
PDB | NULL | OMIM | NULL |
KEGG | rno:309871 | UCSC | RGD:1311765 |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | NULL |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
ENSRNOP00000040939 | Gene3D | G3DSA:3.30.160.60 | IPR013087 | 574 | 603 | 2.00e-14 | Zinc finger C2H2-type/integrase DNA-binding domain |
ENSRNOP00000040939 | Gene3D | G3DSA:3.30.160.60 | IPR013087 | 604 | 623 | 6.00e-13 | Zinc finger C2H2-type/integrase DNA-binding domain |
ENSRNOP00000040939 | Gene3D | G3DSA:3.30.160.60 | IPR013087 | 624 | 649 | 6.80e-16 | Zinc finger C2H2-type/integrase DNA-binding domain |
ENSRNOP00000040939 | Gene3D | G3DSA:3.30.160.60 | IPR013087 | 650 | 676 | 1.50e-10 | Zinc finger C2H2-type/integrase DNA-binding domain |
ENSRNOP00000040939 | Gene3D | G3DSA:3.30.160.60 | IPR013087 | 677 | 706 | 1.90e-06 | Zinc finger C2H2-type/integrase DNA-binding domain |
ENSRNOP00000040939 | Pfam | PF00856 | IPR001214 | 100 | 200 | 3.80e-08 | SET domain |
ENSRNOP00000040939 | PIRSF | PIRSF013212 | IPR016608 | 1 | 824 | 0.00e-00 | PR-domain zinc finger protein PRDM1 |
ENSRNOP00000040939 | ProSitePatterns | PS00028 | IPR007087 | 576 | 596 | - | Zinc finger, C2H2 |
ENSRNOP00000040939 | ProSitePatterns | PS00028 | IPR007087 | 604 | 624 | - | Zinc finger, C2H2 |
ENSRNOP00000040939 | ProSitePatterns | PS00028 | IPR007087 | 632 | 652 | - | Zinc finger, C2H2 |
ENSRNOP00000040939 | ProSitePatterns | PS00028 | IPR007087 | 660 | 680 | - | Zinc finger, C2H2 |
ENSRNOP00000040939 | ProSiteProfiles | PS50157 | IPR007087 | 574 | 601 | 0.00e-00 | Zinc finger, C2H2 |
ENSRNOP00000040939 | ProSiteProfiles | PS50157 | IPR007087 | 602 | 629 | 0.00e-00 | Zinc finger, C2H2 |
ENSRNOP00000040939 | ProSiteProfiles | PS50157 | IPR007087 | 630 | 657 | 0.00e-00 | Zinc finger, C2H2 |
ENSRNOP00000040939 | ProSiteProfiles | PS50157 | IPR007087 | 658 | 685 | 0.00e-00 | Zinc finger, C2H2 |
ENSRNOP00000040939 | ProSiteProfiles | PS50280 | IPR001214 | 83 | 201 | 0.00e-00 | SET domain |
ENSRNOP00000040939 | SMART | SM00317 | IPR001214 | 86 | 207 | 5.40e-22 | SET domain |
ENSRNOP00000040939 | SMART | SM00355 | IPR015880 | 574 | 596 | 2.10e-06 | Zinc finger, C2H2-like |
ENSRNOP00000040939 | SMART | SM00355 | IPR015880 | 602 | 624 | 1.30e-05 | Zinc finger, C2H2-like |
ENSRNOP00000040939 | SMART | SM00355 | IPR015880 | 630 | 652 | 2.50e-05 | Zinc finger, C2H2-like |
ENSRNOP00000040939 | SMART | SM00355 | IPR015880 | 658 | 680 | 4.70e-05 | Zinc finger, C2H2-like |
ENSRNOP00000040939 | SMART | SM00355 | IPR015880 | 686 | 706 | 3.70e-01 | Zinc finger, C2H2-like |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
ENSRNOP00000040939 | PF13465 | 3.5e-27 | zf-H2C2_2 | Zinc-finger double domain |
ENSRNOP00000040939 | PF00096 | 1e-15 | zf-C2H2 | Zinc finger, C2H2 type |
ENSRNOP00000040939 | PF13894 | 7.7e-13 | zf-C2H2_4 | C2H2-type zinc finger |
ENSRNOP00000040939 | PF00856 | 7.4e-09 | SET | SET domain |
ENSRNOP00000040939 | PF13912 | 1.6e-05 | zf-C2H2_6 | C2H2-type zinc finger |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
ENSRNOP00000040939 | GO:0006351 | biological_process | transcription, DNA-templated |
ENSRNOP00000040939 | GO:0006355 | biological_process | regulation of transcription, DNA-templated |
ENSRNOP00000040939 | GO:0005634 | cellular_component | nucleus |
ENSRNOP00000040939 | GO:0003677 | molecular_function | DNA binding |
ENSRNOP00000040939 | GO:0003700 | molecular_function | sequence-specific DNA binding transcription factor activity |
ENSRNOP00000040939 | GO:0046872 | molecular_function | metal ion binding |
Orthologs | |||||
TAXID | Organism | Gene ID | TAXID | Organism | Gene ID |
9796 | Equus caballus | 100071967 | 7425 | Nasonia vitripennis | 100123469 |
7070 | Tribolium castaneum | 100142159 | 9823 | Sus scrofa | 100154284 |
7029 | Acyrthosiphon pisum | 100159482 | 61853 | Nomascus leucogenys | 100585120 |
30195 | Bombus terrestris | 100650488 | 8128 | Oreochromis niloticus | 100706221 |
132113 | Bombus impatiens | 100741638 | 10029 | Cricetulus griseus | 100759446 |
143995 | Megachile rotundata | 100877382 | 34638 | Metaseiulus occidentalis | 100906146 |
30611 | Otolemur garnettii | 100943698 | 9597 | Pan paniscus | 100979416 |
9555 | Papio anubis | 101009742 | 39432 | Saimiri boliviensis | 101033194 |
9595 | Gorilla gorilla | 101142019 | 9669 | Mustela putorius furo | 101675818 |
43179 | Ictidomys tridecemlineatus | 101977297 | 13735 | Pelodiscus sinensis | 102454613 |
10090 | Mus musculus | 12142 | 7955 | Danio rerio | 323473 |
7227 | Drosophila melanogaster | 38638 | 7460 | Apis mellifera | 408295 |
9031 | Gallus gallus | 445340 | 9615 | Canis familiaris | 481947 |
9606 | Homo sapiens | 639 | 7668 | Strongylocentrotus purpuratus | 751833 |
28377 | Anolis carolinensis | ENSACAG00000005496 | 9646 | Ailuropoda melanoleuca | ENSAMEG00000001482 |
9358 | Choloepus hoffmanni | ENSCHOG00000011220 | 10141 | Cavia porcellus | ENSCPOG00000014064 |
51511 | Ciona savignyi | ENSCSAVG00000011146 | 10020 | Dipodomys ordii | ENSDORG00000014237 |
9365 | Erinaceus europaeus | ENSEEUG00000013222 | 9371 | Echinops telfairi | ENSETEG00000019669 |
9685 | Felis catus | ENSFCAG00000010755 | 69293 | Gasterosteus aculeatus | ENSGACG00000009358 |
8049 | Gadus morhua | ENSGMOG00000009730 | 9785 | Loxodonta africana | ENSLAFG00000013436 |
9315 | Macropus eugenii | ENSMEUG00000000043 | 9103 | Meleagris gallopavo | ENSMGAG00000013524 |
30608 | Microcebus murinus | ENSMICG00000010329 | 59463 | Myotis lucifugus | ENSMLUG00000014085 |
9258 | Ornithorhynchus anatinus | ENSOANG00000004176 | 9978 | Ochotona princeps | ENSOPRG00000006055 |
8090 | Oryzias latipes | ENSORLG00000012948 | 9813 | Procavia capensis | ENSPCAG00000009179 |
7757 | Petromyzon marinus | ENSPMAG00000004511 | 132908 | Pteropus vampyrus | ENSPVAG00000011732 |
42254 | Sorex araneus | ENSSARG00000004079 | 37347 | Tupaia belangeri | ENSTBEG00000004089 |
59729 | Taeniopygia guttata | ENSTGUG00000012204 | 99883 | Tetraodon nigroviridis | ENSTNIG00000012300 |
31033 | Takifugu rubripes | ENSTRUG00000000404 | 9478 | Tarsius syrichta | ENSTSYG00000011666 |
9739 | Tursiops truncatus | ENSTTRG00000012894 | 30538 | Vicugna pacos | ENSVPAG00000011363 |
8364 | Xenopus tropicalis | ENSXETG00000008674 | 8083 | Xiphophorus maculatus | ENSXMAG00000013351 |