Basic Information | |||
Gene ID | 100009761 | ||
Gene Name | CSDE1 | ||
Full Name | Uncharacterized protein | ||
Organism | Monodelphis domestica [13616] |
Cross Reference | |||
UniProt | K7E2B4 | UniGene | NULL |
PDB | NULL | OMIM | NULL |
KEGG | mdo:100009761 | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | NULL |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
ENSMODP00000039915 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 185 | 253 | 1.50e-26 | Nucleic acid-binding, OB-fold |
ENSMODP00000039915 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 25 | 93 | 1.60e-25 | Nucleic acid-binding, OB-fold |
ENSMODP00000039915 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 348 | 418 | 1.50e-24 | Nucleic acid-binding, OB-fold |
ENSMODP00000039915 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 457 | 514 | 2.20e-08 | Nucleic acid-binding, OB-fold |
ENSMODP00000039915 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 518 | 582 | 3.60e-21 | Nucleic acid-binding, OB-fold |
ENSMODP00000039915 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 677 | 742 | 8.40e-21 | Nucleic acid-binding, OB-fold |
ENSMODP00000039915 | Pfam | PF00313 | IPR002059 | 186 | 247 | 1.90e-16 | Cold-shock protein, DNA-binding |
ENSMODP00000039915 | Pfam | PF00313 | IPR002059 | 27 | 89 | 1.10e-14 | Cold-shock protein, DNA-binding |
ENSMODP00000039915 | Pfam | PF00313 | IPR002059 | 351 | 411 | 7.30e-09 | Cold-shock protein, DNA-binding |
ENSMODP00000039915 | Pfam | PF00313 | IPR002059 | 521 | 581 | 9.40e-15 | Cold-shock protein, DNA-binding |
ENSMODP00000039915 | Pfam | PF00313 | IPR002059 | 675 | 737 | 4.10e-15 | Cold-shock protein, DNA-binding |
ENSMODP00000039915 | Pfam | PF12901 | IPR024642 | 756 | 789 | 3.40e-13 | SUZ-C domain |
ENSMODP00000039915 | ProSitePatterns | PS00352 | IPR019844 | 197 | 216 | - | Cold-shock conserved site |
ENSMODP00000039915 | ProSitePatterns | PS00352 | IPR019844 | 360 | 379 | - | Cold-shock conserved site |
ENSMODP00000039915 | ProSitePatterns | PS00352 | IPR019844 | 37 | 56 | - | Cold-shock conserved site |
ENSMODP00000039915 | ProSitePatterns | PS00352 | IPR019844 | 530 | 549 | - | Cold-shock conserved site |
ENSMODP00000039915 | SMART | SM00357 | IPR011129 | 187 | 248 | 3.60e-21 | Cold shock protein |
ENSMODP00000039915 | SMART | SM00357 | IPR011129 | 27 | 90 | 8.30e-19 | Cold shock protein |
ENSMODP00000039915 | SMART | SM00357 | IPR011129 | 350 | 413 | 2.20e-17 | Cold shock protein |
ENSMODP00000039915 | SMART | SM00357 | IPR011129 | 520 | 582 | 2.40e-17 | Cold shock protein |
ENSMODP00000039915 | SMART | SM00357 | IPR011129 | 675 | 738 | 8.90e-19 | Cold shock protein |
ENSMODP00000039915 | SUPERFAMILY | SSF50249 | IPR012340 | 17 | 93 | 0.00e-00 | Nucleic acid-binding, OB-fold |
ENSMODP00000039915 | SUPERFAMILY | SSF50249 | IPR012340 | 183 | 253 | 0.00e-00 | Nucleic acid-binding, OB-fold |
ENSMODP00000039915 | SUPERFAMILY | SSF50249 | IPR012340 | 336 | 417 | 0.00e-00 | Nucleic acid-binding, OB-fold |
ENSMODP00000039915 | SUPERFAMILY | SSF50249 | IPR012340 | 510 | 582 | 0.00e-00 | Nucleic acid-binding, OB-fold |
ENSMODP00000039915 | SUPERFAMILY | SSF50249 | IPR012340 | 661 | 741 | 0.00e-00 | Nucleic acid-binding, OB-fold |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
ENSMODP00000039915 | PF00313 | 0 | CSD | 'Cold-shock' DNA-binding domain |
ENSMODP00000039915 | PF14444 | 1.8e-14 | S1-like | S1-like |
ENSMODP00000039915 | PF12901 | 1.5e-13 | SUZ-C | SUZ-C motif |
ENSMODP00000039915 | PF11604 | 1.1e-07 | CusF_Ec | Copper binding periplasmic protein CusF |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
ENSMODP00000039915 | GO:0006355 | biological_process | regulation of transcription, DNA-templated |
ENSMODP00000039915 | GO:0070966 | biological_process | nuclear-transcribed mRNA catabolic process, no-go decay |
ENSMODP00000039915 | GO:0005737 | cellular_component | cytoplasm |
ENSMODP00000039915 | GO:0070937 | cellular_component | CRD-mediated mRNA stability complex |
ENSMODP00000039915 | GO:0003677 | molecular_function | DNA binding |
ENSMODP00000039915 | GO:0003723 | molecular_function | RNA binding |
Orthologs | |||||
TAXID | Organism | Gene ID | TAXID | Organism | Gene ID |
7425 | Nasonia vitripennis | 100123206 | 61853 | Nomascus leucogenys | 100590871 |
400682 | Amphimedon queenslandica | 100631963 | 8128 | Oreochromis niloticus | 100701469 |
34638 | Metaseiulus occidentalis | 100908518 | 9597 | Pan paniscus | 100968628 |
9555 | Papio anubis | 101024024 | 39432 | Saimiri boliviensis | 101034862 |
9595 | Gorilla gorilla | 101146917 | 59463 | Myotis lucifugus | 102429010 |
7070 | Tribolium castaneum | 655517 | 9606 | Homo sapiens | 7812 |
9646 | Ailuropoda melanoleuca | ENSAMEG00000017129 | 9615 | Canis familiaris | ENSCAFG00000009618 |
9358 | Choloepus hoffmanni | ENSCHOG00000000918 | 7719 | Ciona intestinalis | ENSCING00000014465 |
9483 | Callithrix jacchus | ENSCJAG00000012565 | 51511 | Ciona savignyi | ENSCSAVG00000008100 |
9361 | Dasypus novemcinctus | ENSDNOG00000010287 | 10020 | Dipodomys ordii | ENSDORG00000011609 |
9796 | Equus caballus | ENSECAG00000020885 | 9371 | Echinops telfairi | ENSETEG00000006280 |
9685 | Felis catus | ENSFCAG00000029266 | 69293 | Gasterosteus aculeatus | ENSGACG00000004544 |
9031 | Gallus gallus | ENSGALG00000002139 | 8049 | Gadus morhua | ENSGMOG00000012731 |
9785 | Loxodonta africana | ENSLAFG00000007150 | 9315 | Macropus eugenii | ENSMEUG00000002677 |
9103 | Meleagris gallopavo | ENSMGAG00000016381 | 9258 | Ornithorhynchus anatinus | ENSOANG00000003346 |
8090 | Oryzias latipes | ENSORLG00000000707 | 9813 | Procavia capensis | ENSPCAG00000014368 |
9601 | Pongo abelii | ENSPPYG00000000996 | 13735 | Pelodiscus sinensis | ENSPSIG00000003823 |
132908 | Pteropus vampyrus | ENSPVAG00000008225 | 42254 | Sorex araneus | ENSSARG00000000738 |
9823 | Sus scrofa | ENSSSCG00000006752 | 59729 | Taeniopygia guttata | ENSTGUG00000000972 |
99883 | Tetraodon nigroviridis | ENSTNIG00000010878 | 31033 | Takifugu rubripes | ENSTRUG00000007996 |
9478 | Tarsius syrichta | ENSTSYG00000003747 | 9739 | Tursiops truncatus | ENSTTRG00000015583 |
30538 | Vicugna pacos | ENSVPAG00000000749 | 8083 | Xiphophorus maculatus | ENSXMAG00000009080 |
10090 | Mus musculus | 229663 | 9365 | Erinaceus europaeus | ENSEEUG00000006286 |
9669 | Mustela putorius furo | ENSMPUG00000005753 | 9978 | Ochotona princeps | ENSOPRG00000005002 |