Basic Information
Gene ID 100701469
Gene Name csde1
Full Name Uncharacterized protein
Organism Oreochromis niloticus [8128]

Cross Reference
UniProt I3JS60 UniGene NULL
PDB NULL OMIM NULL
KEGG NULL UCSC NULL

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING NULL

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
ENSONIP00000011705 Gene3D G3DSA:2.40.50.140 IPR012340 162 199 7.30e-05 Nucleic acid-binding, OB-fold
ENSONIP00000011705 Gene3D G3DSA:2.40.50.140 IPR012340 201 270 8.50e-26 Nucleic acid-binding, OB-fold
ENSONIP00000011705 Gene3D G3DSA:2.40.50.140 IPR012340 25 93 3.00e-25 Nucleic acid-binding, OB-fold
ENSONIP00000011705 Gene3D G3DSA:2.40.50.140 IPR012340 366 436 1.30e-23 Nucleic acid-binding, OB-fold
ENSONIP00000011705 Gene3D G3DSA:2.40.50.140 IPR012340 475 531 1.80e-08 Nucleic acid-binding, OB-fold
ENSONIP00000011705 Gene3D G3DSA:2.40.50.140 IPR012340 536 602 1.90e-20 Nucleic acid-binding, OB-fold
ENSONIP00000011705 Gene3D G3DSA:2.40.50.140 IPR012340 696 761 5.00e-21 Nucleic acid-binding, OB-fold
ENSONIP00000011705 Pfam PF00313 IPR002059 204 264 2.80e-16 Cold-shock protein, DNA-binding
ENSONIP00000011705 Pfam PF00313 IPR002059 27 88 1.80e-14 Cold-shock protein, DNA-binding
ENSONIP00000011705 Pfam PF00313 IPR002059 369 429 3.00e-08 Cold-shock protein, DNA-binding
ENSONIP00000011705 Pfam PF00313 IPR002059 539 601 7.50e-13 Cold-shock protein, DNA-binding
ENSONIP00000011705 Pfam PF00313 IPR002059 694 756 1.80e-14 Cold-shock protein, DNA-binding
ENSONIP00000011705 Pfam PF12901 IPR024642 775 808 1.10e-12 SUZ-C domain
ENSONIP00000011705 ProSitePatterns PS00352 IPR019844 214 233 - Cold-shock conserved site
ENSONIP00000011705 ProSitePatterns PS00352 IPR019844 37 56 - Cold-shock conserved site
ENSONIP00000011705 ProSitePatterns PS00352 IPR019844 378 397 - Cold-shock conserved site
ENSONIP00000011705 ProSitePatterns PS00352 IPR019844 549 568 - Cold-shock conserved site
ENSONIP00000011705 SMART SM00357 IPR011129 204 265 2.50e-21 Cold shock protein
ENSONIP00000011705 SMART SM00357 IPR011129 27 90 3.20e-18 Cold shock protein
ENSONIP00000011705 SMART SM00357 IPR011129 368 431 4.10e-14 Cold shock protein
ENSONIP00000011705 SMART SM00357 IPR011129 539 601 2.40e-14 Cold shock protein
ENSONIP00000011705 SMART SM00357 IPR011129 694 757 3.90e-18 Cold shock protein
ENSONIP00000011705 SUPERFAMILY SSF50249 IPR012340 198 270 0.00e-00 Nucleic acid-binding, OB-fold
ENSONIP00000011705 SUPERFAMILY SSF50249 IPR012340 22 93 0.00e-00 Nucleic acid-binding, OB-fold
ENSONIP00000011705 SUPERFAMILY SSF50249 IPR012340 358 435 0.00e-00 Nucleic acid-binding, OB-fold
ENSONIP00000011705 SUPERFAMILY SSF50249 IPR012340 533 602 0.00e-00 Nucleic acid-binding, OB-fold
ENSONIP00000011705 SUPERFAMILY SSF50249 IPR012340 688 760 0.00e-00 Nucleic acid-binding, OB-fold

Pfam Annotation
Protein Pfam ID E.value Name Description
ENSONIP00000011705 PF00313 0 CSD 'Cold-shock' DNA-binding domain
ENSONIP00000011705 PF14444 2.6e-13 S1-like S1-like
ENSONIP00000011705 PF12901 4.6e-13 SUZ-C SUZ-C motif
ENSONIP00000011705 PF11604 2.8e-06 CusF_Ec Copper binding periplasmic protein CusF

Gene Ontology Annotation
Protein Entry Name Space Description
ENSONIP00000011705 GO:0006355 biological_process regulation of transcription, DNA-templated
ENSONIP00000011705 GO:0070966 biological_process nuclear-transcribed mRNA catabolic process, no-go decay
ENSONIP00000011705 GO:0005737 cellular_component cytoplasm
ENSONIP00000011705 GO:0070937 cellular_component CRD-mediated mRNA stability complex
ENSONIP00000011705 GO:0003677 molecular_function DNA binding
ENSONIP00000011705 GO:0003723 molecular_function RNA binding

Orthologs
TAXID Organism Gene ID TAXID Organism Gene ID
13616 Monodelphis domestica 100009761 7425 Nasonia vitripennis 100123206
61853 Nomascus leucogenys 100590871 400682 Amphimedon queenslandica 100631963
34638 Metaseiulus occidentalis 100908518 9555 Papio anubis 101024024
9595 Gorilla gorilla 101146917 9361 Dasypus novemcinctus ENSDNOG00000010287
9103 Meleagris gallopavo ENSMGAG00000016381 31033 Takifugu rubripes ENSTRUG00000007996
9597 Pan paniscus 100968628 39432 Saimiri boliviensis 101034862
59463 Myotis lucifugus 102429010 10090 Mus musculus 229663
7070 Tribolium castaneum 655517 9606 Homo sapiens 7812
9646 Ailuropoda melanoleuca ENSAMEG00000017129 9615 Canis familiaris ENSCAFG00000009618
9358 Choloepus hoffmanni ENSCHOG00000000918 7719 Ciona intestinalis ENSCING00000014465
9483 Callithrix jacchus ENSCJAG00000012565 51511 Ciona savignyi ENSCSAVG00000008100
10020 Dipodomys ordii ENSDORG00000011609 9796 Equus caballus ENSECAG00000020885
9365 Erinaceus europaeus ENSEEUG00000006286 9371 Echinops telfairi ENSETEG00000006280
9685 Felis catus ENSFCAG00000029266 69293 Gasterosteus aculeatus ENSGACG00000004544
9031 Gallus gallus ENSGALG00000002139 8049 Gadus morhua ENSGMOG00000012731
9785 Loxodonta africana ENSLAFG00000007150 9315 Macropus eugenii ENSMEUG00000002677
9669 Mustela putorius furo ENSMPUG00000005753 9258 Ornithorhynchus anatinus ENSOANG00000003346
9978 Ochotona princeps ENSOPRG00000005002 8090 Oryzias latipes ENSORLG00000000707
9813 Procavia capensis ENSPCAG00000014368 9601 Pongo abelii ENSPPYG00000000996
13735 Pelodiscus sinensis ENSPSIG00000003823 132908 Pteropus vampyrus ENSPVAG00000008225
42254 Sorex araneus ENSSARG00000000738 9823 Sus scrofa ENSSSCG00000006752
59729 Taeniopygia guttata ENSTGUG00000000972 99883 Tetraodon nigroviridis ENSTNIG00000010878
9478 Tarsius syrichta ENSTSYG00000003747 9739 Tursiops truncatus ENSTTRG00000015583
30538 Vicugna pacos ENSVPAG00000000749 8083 Xiphophorus maculatus ENSXMAG00000009080