Basic Information | |||
Gene ID | ENSMGAG00000016381 | ||
Gene Name | CSDE1 | ||
Full Name | Uncharacterized protein | ||
Organism | Meleagris gallopavo [9103] |
Cross Reference | |||
UniProt | G3UPQ1 | UniGene | NULL |
PDB | NULL | OMIM | NULL |
KEGG | NULL | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | NULL |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
ENSEMBL |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
ENSMGAP00000017554 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 185 | 253 | 1.50e-26 | Nucleic acid-binding, OB-fold |
ENSMGAP00000017554 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 25 | 93 | 1.60e-25 | Nucleic acid-binding, OB-fold |
ENSMGAP00000017554 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 348 | 418 | 2.40e-24 | Nucleic acid-binding, OB-fold |
ENSMGAP00000017554 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 455 | 511 | 1.90e-06 | Nucleic acid-binding, OB-fold |
ENSMGAP00000017554 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 516 | 580 | 1.10e-20 | Nucleic acid-binding, OB-fold |
ENSMGAP00000017554 | Gene3D | G3DSA:2.40.50.140 | IPR012340 | 675 | 739 | 1.00e-20 | Nucleic acid-binding, OB-fold |
ENSMGAP00000017554 | Pfam | PF00313 | IPR002059 | 186 | 247 | 1.90e-16 | Cold-shock protein, DNA-binding |
ENSMGAP00000017554 | Pfam | PF00313 | IPR002059 | 27 | 89 | 1.10e-14 | Cold-shock protein, DNA-binding |
ENSMGAP00000017554 | Pfam | PF00313 | IPR002059 | 351 | 411 | 3.50e-09 | Cold-shock protein, DNA-binding |
ENSMGAP00000017554 | Pfam | PF00313 | IPR002059 | 519 | 579 | 1.20e-13 | Cold-shock protein, DNA-binding |
ENSMGAP00000017554 | Pfam | PF00313 | IPR002059 | 673 | 735 | 3.90e-15 | Cold-shock protein, DNA-binding |
ENSMGAP00000017554 | Pfam | PF12901 | IPR024642 | 754 | 785 | 5.30e-11 | SUZ-C domain |
ENSMGAP00000017554 | ProSitePatterns | PS00352 | IPR019844 | 197 | 216 | - | Cold-shock conserved site |
ENSMGAP00000017554 | ProSitePatterns | PS00352 | IPR019844 | 360 | 379 | - | Cold-shock conserved site |
ENSMGAP00000017554 | ProSitePatterns | PS00352 | IPR019844 | 37 | 56 | - | Cold-shock conserved site |
ENSMGAP00000017554 | ProSitePatterns | PS00352 | IPR019844 | 528 | 547 | - | Cold-shock conserved site |
ENSMGAP00000017554 | SMART | SM00357 | IPR011129 | 187 | 248 | 3.60e-21 | Cold shock protein |
ENSMGAP00000017554 | SMART | SM00357 | IPR011129 | 27 | 90 | 8.30e-19 | Cold shock protein |
ENSMGAP00000017554 | SMART | SM00357 | IPR011129 | 350 | 413 | 9.80e-17 | Cold shock protein |
ENSMGAP00000017554 | SMART | SM00357 | IPR011129 | 518 | 580 | 8.60e-16 | Cold shock protein |
ENSMGAP00000017554 | SMART | SM00357 | IPR011129 | 673 | 736 | 1.10e-18 | Cold shock protein |
ENSMGAP00000017554 | SUPERFAMILY | SSF50249 | IPR012340 | 17 | 93 | 0.00e-00 | Nucleic acid-binding, OB-fold |
ENSMGAP00000017554 | SUPERFAMILY | SSF50249 | IPR012340 | 181 | 253 | 0.00e-00 | Nucleic acid-binding, OB-fold |
ENSMGAP00000017554 | SUPERFAMILY | SSF50249 | IPR012340 | 335 | 417 | 0.00e-00 | Nucleic acid-binding, OB-fold |
ENSMGAP00000017554 | SUPERFAMILY | SSF50249 | IPR012340 | 514 | 580 | 0.00e-00 | Nucleic acid-binding, OB-fold |
ENSMGAP00000017554 | SUPERFAMILY | SSF50249 | IPR012340 | 659 | 738 | 0.00e-00 | Nucleic acid-binding, OB-fold |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
ENSMGAP00000017554 | PF00313 | 0 | CSD | 'Cold-shock' DNA-binding domain |
ENSMGAP00000017554 | PF14444 | 1.3e-14 | S1-like | S1-like |
ENSMGAP00000017554 | PF12901 | 2.3e-11 | SUZ-C | SUZ-C motif |
ENSMGAP00000017554 | PF11604 | 7.8e-07 | CusF_Ec | Copper binding periplasmic protein CusF |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
ENSMGAP00000017554 | GO:0006355 | biological_process | regulation of transcription, DNA-templated |
ENSMGAP00000017554 | GO:0070966 | biological_process | nuclear-transcribed mRNA catabolic process, no-go decay |
ENSMGAP00000017554 | GO:0005737 | cellular_component | cytoplasm |
ENSMGAP00000017554 | GO:0070937 | cellular_component | CRD-mediated mRNA stability complex |
ENSMGAP00000017554 | GO:0003677 | molecular_function | DNA binding |
ENSMGAP00000017554 | GO:0003723 | molecular_function | RNA binding |
Orthologs | |||||
TAXID | Organism | Gene ID | TAXID | Organism | Gene ID |
13616 | Monodelphis domestica | 100009761 | 7425 | Nasonia vitripennis | 100123206 |
61853 | Nomascus leucogenys | 100590871 | 400682 | Amphimedon queenslandica | 100631963 |
8128 | Oreochromis niloticus | 100701469 | 9597 | Pan paniscus | 100968628 |
39432 | Saimiri boliviensis | 101034862 | 59463 | Myotis lucifugus | 102429010 |
10090 | Mus musculus | 229663 | 7070 | Tribolium castaneum | 655517 |
9606 | Homo sapiens | 7812 | 9646 | Ailuropoda melanoleuca | ENSAMEG00000017129 |
9615 | Canis familiaris | ENSCAFG00000009618 | 9358 | Choloepus hoffmanni | ENSCHOG00000000918 |
7719 | Ciona intestinalis | ENSCING00000014465 | 9483 | Callithrix jacchus | ENSCJAG00000012565 |
51511 | Ciona savignyi | ENSCSAVG00000008100 | 10020 | Dipodomys ordii | ENSDORG00000011609 |
9796 | Equus caballus | ENSECAG00000020885 | 9365 | Erinaceus europaeus | ENSEEUG00000006286 |
9371 | Echinops telfairi | ENSETEG00000006280 | 9685 | Felis catus | ENSFCAG00000029266 |
69293 | Gasterosteus aculeatus | ENSGACG00000004544 | 9031 | Gallus gallus | ENSGALG00000002139 |
8049 | Gadus morhua | ENSGMOG00000012731 | 9785 | Loxodonta africana | ENSLAFG00000007150 |
9315 | Macropus eugenii | ENSMEUG00000002677 | 34638 | Metaseiulus occidentalis | 100908518 |
9555 | Papio anubis | 101024024 | 9595 | Gorilla gorilla | 101146917 |
9361 | Dasypus novemcinctus | ENSDNOG00000010287 | 31033 | Takifugu rubripes | ENSTRUG00000007996 |
9669 | Mustela putorius furo | ENSMPUG00000005753 | 9258 | Ornithorhynchus anatinus | ENSOANG00000003346 |
9978 | Ochotona princeps | ENSOPRG00000005002 | 8090 | Oryzias latipes | ENSORLG00000000707 |
9813 | Procavia capensis | ENSPCAG00000014368 | 9601 | Pongo abelii | ENSPPYG00000000996 |
13735 | Pelodiscus sinensis | ENSPSIG00000003823 | 132908 | Pteropus vampyrus | ENSPVAG00000008225 |
42254 | Sorex araneus | ENSSARG00000000738 | 9823 | Sus scrofa | ENSSSCG00000006752 |
59729 | Taeniopygia guttata | ENSTGUG00000000972 | 99883 | Tetraodon nigroviridis | ENSTNIG00000010878 |
9478 | Tarsius syrichta | ENSTSYG00000003747 | 9739 | Tursiops truncatus | ENSTTRG00000015583 |
30538 | Vicugna pacos | ENSVPAG00000000749 | 8083 | Xiphophorus maculatus | ENSXMAG00000009080 |