Basic Information
Gene ID 229663 ; Check Expression Profles ; Check TFs & Targets Binding
Gene Name Csde1; D3Jfr1
Full Name Cold shock domain-containing protein E1
Organism Mus musculus [10090]

Cross Reference
UniProt Q91W50 UniGene Mm.277713
PDB NULL OMIM NULL
KEGG mmu:229663 UCSC uc008qsg.2

Protein Interactions
DIP NULL
IntAct Q91W50
MINT MINT-4121285
STRING NULL

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
REFSEQ
REFSEQ
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
ENSMUSP00000029446 Gene3D G3DSA:2.40.50.140 IPR012340 185 253 1.20e-26 Nucleic acid-binding, OB-fold
ENSMUSP00000029446 Gene3D G3DSA:2.40.50.140 IPR012340 25 93 1.80e-25 Nucleic acid-binding, OB-fold
ENSMUSP00000029446 Gene3D G3DSA:2.40.50.140 IPR012340 348 418 1.80e-24 Nucleic acid-binding, OB-fold
ENSMUSP00000029446 Gene3D G3DSA:2.40.50.140 IPR012340 457 514 2.70e-10 Nucleic acid-binding, OB-fold
ENSMUSP00000029446 Gene3D G3DSA:2.40.50.140 IPR012340 518 582 3.90e-21 Nucleic acid-binding, OB-fold
ENSMUSP00000029446 Gene3D G3DSA:2.40.50.140 IPR012340 677 742 6.90e-21 Nucleic acid-binding, OB-fold
ENSMUSP00000029446 Pfam PF00313 IPR002059 186 247 6.80e-17 Cold-shock protein, DNA-binding
ENSMUSP00000029446 Pfam PF00313 IPR002059 27 89 1.80e-14 Cold-shock protein, DNA-binding
ENSMUSP00000029446 Pfam PF00313 IPR002059 351 411 9.00e-09 Cold-shock protein, DNA-binding
ENSMUSP00000029446 Pfam PF00313 IPR002059 521 581 1.00e-14 Cold-shock protein, DNA-binding
ENSMUSP00000029446 Pfam PF00313 IPR002059 675 737 3.90e-15 Cold-shock protein, DNA-binding
ENSMUSP00000029446 Pfam PF12901 IPR024642 756 789 7.60e-13 SUZ-C domain
ENSMUSP00000029446 ProSitePatterns PS00352 IPR019844 197 216 - Cold-shock conserved site
ENSMUSP00000029446 ProSitePatterns PS00352 IPR019844 360 379 - Cold-shock conserved site
ENSMUSP00000029446 ProSitePatterns PS00352 IPR019844 37 56 - Cold-shock conserved site
ENSMUSP00000029446 ProSitePatterns PS00352 IPR019844 530 549 - Cold-shock conserved site
ENSMUSP00000029446 SMART SM00357 IPR011129 187 248 7.20e-22 Cold shock protein
ENSMUSP00000029446 SMART SM00357 IPR011129 27 90 1.50e-18 Cold shock protein
ENSMUSP00000029446 SMART SM00357 IPR011129 350 413 3.00e-18 Cold shock protein
ENSMUSP00000029446 SMART SM00357 IPR011129 520 582 1.40e-17 Cold shock protein
ENSMUSP00000029446 SMART SM00357 IPR011129 675 738 1.10e-18 Cold shock protein
ENSMUSP00000029446 SUPERFAMILY SSF50249 IPR012340 17 93 0.00e-00 Nucleic acid-binding, OB-fold
ENSMUSP00000029446 SUPERFAMILY SSF50249 IPR012340 183 253 0.00e-00 Nucleic acid-binding, OB-fold
ENSMUSP00000029446 SUPERFAMILY SSF50249 IPR012340 336 417 0.00e-00 Nucleic acid-binding, OB-fold
ENSMUSP00000029446 SUPERFAMILY SSF50249 IPR012340 504 581 0.00e-00 Nucleic acid-binding, OB-fold
ENSMUSP00000029446 SUPERFAMILY SSF50249 IPR012340 661 741 0.00e-00 Nucleic acid-binding, OB-fold

Pfam Annotation
Protein Pfam ID E.value Name Description
ENSMUSP00000029446 PF00313 0 CSD 'Cold-shock' DNA-binding domain
ENSMUSP00000029446 PF14444 3.7e-15 S1-like S1-like
ENSMUSP00000029446 PF12901 3.6e-13 SUZ-C SUZ-C motif
ENSMUSP00000029446 PF11604 9.1e-08 CusF_Ec Copper binding periplasmic protein CusF

Gene Ontology Annotation
Protein Entry Name Space Description
ENSMUSP00000029446 GO:0006355 biological_process regulation of transcription, DNA-templated
ENSMUSP00000029446 GO:0070966 biological_process nuclear-transcribed mRNA catabolic process, no-go decay
ENSMUSP00000029446 GO:0005737 cellular_component cytoplasm
ENSMUSP00000029446 GO:0070937 cellular_component CRD-mediated mRNA stability complex
ENSMUSP00000029446 GO:0003677 molecular_function DNA binding
ENSMUSP00000029446 GO:0003723 molecular_function RNA binding

Orthologs
TAXID Organism Gene ID TAXID Organism Gene ID
13616 Monodelphis domestica 100009761 7425 Nasonia vitripennis 100123206
61853 Nomascus leucogenys 100590871 400682 Amphimedon queenslandica 100631963
8128 Oreochromis niloticus 100701469 34638 Metaseiulus occidentalis 100908518
9597 Pan paniscus 100968628 9555 Papio anubis 101024024
39432 Saimiri boliviensis 101034862 9595 Gorilla gorilla 101146917
59463 Myotis lucifugus 102429010 7070 Tribolium castaneum 655517
9606 Homo sapiens 7812 9646 Ailuropoda melanoleuca ENSAMEG00000017129
9615 Canis familiaris ENSCAFG00000009618 9358 Choloepus hoffmanni ENSCHOG00000000918
7719 Ciona intestinalis ENSCING00000014465 9483 Callithrix jacchus ENSCJAG00000012565
51511 Ciona savignyi ENSCSAVG00000008100 9361 Dasypus novemcinctus ENSDNOG00000010287
10020 Dipodomys ordii ENSDORG00000011609 9796 Equus caballus ENSECAG00000020885
9371 Echinops telfairi ENSETEG00000006280 9685 Felis catus ENSFCAG00000029266
69293 Gasterosteus aculeatus ENSGACG00000004544 9031 Gallus gallus ENSGALG00000002139
8049 Gadus morhua ENSGMOG00000012731 9785 Loxodonta africana ENSLAFG00000007150
9315 Macropus eugenii ENSMEUG00000002677 9103 Meleagris gallopavo ENSMGAG00000016381
9669 Mustela putorius furo ENSMPUG00000005753 9258 Ornithorhynchus anatinus ENSOANG00000003346
9978 Ochotona princeps ENSOPRG00000005002 8090 Oryzias latipes ENSORLG00000000707
9813 Procavia capensis ENSPCAG00000014368 9601 Pongo abelii ENSPPYG00000000996
13735 Pelodiscus sinensis ENSPSIG00000003823 132908 Pteropus vampyrus ENSPVAG00000008225
42254 Sorex araneus ENSSARG00000000738 9823 Sus scrofa ENSSSCG00000006752
59729 Taeniopygia guttata ENSTGUG00000000972 99883 Tetraodon nigroviridis ENSTNIG00000010878
31033 Takifugu rubripes ENSTRUG00000007996 9478 Tarsius syrichta ENSTSYG00000003747
9739 Tursiops truncatus ENSTTRG00000015583 30538 Vicugna pacos ENSVPAG00000000749
8083 Xiphophorus maculatus ENSXMAG00000009080 9365 Erinaceus europaeus ENSEEUG00000006286