Basic Information
Gene ID 100908518
Gene Name LOC100908518
Full Name PREDICTED: cold shock domain-containing protein E1-like[Metaseiulus occidentalis].
Organism Metaseiulus occidentalis [34638]

Cross Reference
UniProt NULL UniGene NULL
PDB NULL OMIM NULL
KEGG NULL UCSC NULL

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING NULL

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
XP_003745036 Gene3D G3DSA:2.40.50.140 IPR012340 25 93 7.10e-23 Nucleic acid-binding, OB-fold
XP_003745036 Gene3D G3DSA:2.40.50.140 IPR012340 366 431 5.20e-19 Nucleic acid-binding, OB-fold
XP_003745036 Gene3D G3DSA:2.40.50.140 IPR012340 524 595 1.20e-09 Nucleic acid-binding, OB-fold
XP_003745036 Gene3D G3DSA:2.40.50.140 IPR012340 615 680 9.30e-17 Nucleic acid-binding, OB-fold
XP_003745036 Gene3D G3DSA:2.40.50.140 IPR012340 793 857 3.40e-06 Nucleic acid-binding, OB-fold
XP_003745036 Pfam PF00313 IPR002059 28 91 2.90e-11 Cold-shock protein, DNA-binding
XP_003745036 Pfam PF00313 IPR002059 368 425 3.00e-11 Cold-shock protein, DNA-binding
XP_003745036 Pfam PF00313 IPR002059 615 673 3.80e-10 Cold-shock protein, DNA-binding
XP_003745036 Pfam PF12901 IPR024642 878 898 3.00e-05 SUZ-C domain
XP_003745036 ProSitePatterns PS00352 IPR019844 38 57 - Cold-shock conserved site
XP_003745036 ProSitePatterns PS00352 IPR019844 625 644 - Cold-shock conserved site
XP_003745036 SMART SM00357 IPR011129 28 91 3.40e-12 Cold shock protein
XP_003745036 SMART SM00357 IPR011129 368 426 1.30e-16 Cold shock protein
XP_003745036 SMART SM00357 IPR011129 526 590 5.20e-03 Cold shock protein
XP_003745036 SMART SM00357 IPR011129 615 675 1.20e-12 Cold shock protein
XP_003745036 SUPERFAMILY SSF50249 IPR012340 25 93 0.00e-00 Nucleic acid-binding, OB-fold
XP_003745036 SUPERFAMILY SSF50249 IPR012340 361 431 0.00e-00 Nucleic acid-binding, OB-fold
XP_003745036 SUPERFAMILY SSF50249 IPR012340 521 576 0.00e-00 Nucleic acid-binding, OB-fold
XP_003745036 SUPERFAMILY SSF50249 IPR012340 613 678 0.00e-00 Nucleic acid-binding, OB-fold

Pfam Annotation
Protein Pfam ID E.value Name Description
XP_003745036 PF00313 0 CSD 'Cold-shock' DNA-binding domain
XP_003745036 PF14444 1.1e-09 S1-like S1-like
XP_003745036 PF12901 9.6e-06 SUZ-C SUZ-C motif
XP_003745036 PF11604 1.2e-05 CusF_Ec Copper binding periplasmic protein CusF

Gene Ontology Annotation
Protein Entry Name Space Description
XP_003745036 GO:0006355 biological_process regulation of transcription, DNA-templated
XP_003745036 GO:0070966 biological_process nuclear-transcribed mRNA catabolic process, no-go decay
XP_003745036 GO:0005737 cellular_component cytoplasm
XP_003745036 GO:0070937 cellular_component CRD-mediated mRNA stability complex
XP_003745036 GO:0003677 molecular_function DNA binding
XP_003745036 GO:0003723 molecular_function RNA binding

Orthologs
TAXID Organism Gene ID TAXID Organism Gene ID
13616 Monodelphis domestica 100009761 7425 Nasonia vitripennis 100123206
61853 Nomascus leucogenys 100590871 400682 Amphimedon queenslandica 100631963
8128 Oreochromis niloticus 100701469 9597 Pan paniscus 100968628
9555 Papio anubis 101024024 39432 Saimiri boliviensis 101034862
9595 Gorilla gorilla 101146917 59463 Myotis lucifugus 102429010
10090 Mus musculus 229663 7070 Tribolium castaneum 655517
9606 Homo sapiens 7812 9646 Ailuropoda melanoleuca ENSAMEG00000017129
9615 Canis familiaris ENSCAFG00000009618 9358 Choloepus hoffmanni ENSCHOG00000000918
7719 Ciona intestinalis ENSCING00000014465 9483 Callithrix jacchus ENSCJAG00000012565
51511 Ciona savignyi ENSCSAVG00000008100 9361 Dasypus novemcinctus ENSDNOG00000010287
10020 Dipodomys ordii ENSDORG00000011609 9796 Equus caballus ENSECAG00000020885
9365 Erinaceus europaeus ENSEEUG00000006286 9371 Echinops telfairi ENSETEG00000002491
9685 Felis catus ENSFCAG00000029266 69293 Gasterosteus aculeatus ENSGACG00000004544
9031 Gallus gallus ENSGALG00000002139 8049 Gadus morhua ENSGMOG00000012731
9785 Loxodonta africana ENSLAFG00000007150 9315 Macropus eugenii ENSMEUG00000002677
9103 Meleagris gallopavo ENSMGAG00000016381 9669 Mustela putorius furo ENSMPUG00000005753
9258 Ornithorhynchus anatinus ENSOANG00000003346 9978 Ochotona princeps ENSOPRG00000005002
8090 Oryzias latipes ENSORLG00000000707 9813 Procavia capensis ENSPCAG00000014368
9601 Pongo abelii ENSPPYG00000000996 13735 Pelodiscus sinensis ENSPSIG00000003823
132908 Pteropus vampyrus ENSPVAG00000008225 42254 Sorex araneus ENSSARG00000000738
9823 Sus scrofa ENSSSCG00000006752 59729 Taeniopygia guttata ENSTGUG00000000972
99883 Tetraodon nigroviridis ENSTNIG00000010878 31033 Takifugu rubripes ENSTRUG00000007996
9478 Tarsius syrichta ENSTSYG00000003747 9739 Tursiops truncatus ENSTTRG00000015583
30538 Vicugna pacos ENSVPAG00000000749 8083 Xiphophorus maculatus ENSXMAG00000009080