Basic Information
Gene ID ENSSSCG00000006752
Gene Name CSDE1
Full Name Uncharacterized protein
Organism Sus scrofa [9823]

Cross Reference
UniProt F1SBS1 UniGene NULL
PDB NULL OMIM NULL
KEGG NULL UCSC NULL

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING NULL

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL

InterPro Annotation
Protein Program Term IPRS Start End Score Description
ENSSSCP00000007202 Gene3D G3DSA:2.40.50.140 IPR012340 208 276 1.30e-26 Nucleic acid-binding, OB-fold
ENSSSCP00000007202 Gene3D G3DSA:2.40.50.140 IPR012340 371 441 1.90e-24 Nucleic acid-binding, OB-fold
ENSSSCP00000007202 Gene3D G3DSA:2.40.50.140 IPR012340 480 537 5.50e-10 Nucleic acid-binding, OB-fold
ENSSSCP00000007202 Gene3D G3DSA:2.40.50.140 IPR012340 541 605 4.30e-21 Nucleic acid-binding, OB-fold
ENSSSCP00000007202 Gene3D G3DSA:2.40.50.140 IPR012340 700 765 8.70e-21 Nucleic acid-binding, OB-fold
ENSSSCP00000007202 Gene3D G3DSA:2.40.50.140 IPR012340 79 147 1.90e-25 Nucleic acid-binding, OB-fold
ENSSSCP00000007202 Pfam PF00313 IPR002059 209 270 7.00e-17 Cold-shock protein, DNA-binding
ENSSSCP00000007202 Pfam PF00313 IPR002059 374 434 9.40e-09 Cold-shock protein, DNA-binding
ENSSSCP00000007202 Pfam PF00313 IPR002059 544 604 8.80e-15 Cold-shock protein, DNA-binding
ENSSSCP00000007202 Pfam PF00313 IPR002059 698 760 4.20e-15 Cold-shock protein, DNA-binding
ENSSSCP00000007202 Pfam PF00313 IPR002059 81 143 1.80e-14 Cold-shock protein, DNA-binding
ENSSSCP00000007202 Pfam PF12901 IPR024642 779 812 7.90e-13 SUZ-C domain
ENSSSCP00000007202 ProSitePatterns PS00352 IPR019844 220 239 - Cold-shock conserved site
ENSSSCP00000007202 ProSitePatterns PS00352 IPR019844 383 402 - Cold-shock conserved site
ENSSSCP00000007202 ProSitePatterns PS00352 IPR019844 553 572 - Cold-shock conserved site
ENSSSCP00000007202 ProSitePatterns PS00352 IPR019844 91 110 - Cold-shock conserved site
ENSSSCP00000007202 SMART SM00357 IPR011129 210 271 7.20e-22 Cold shock protein
ENSSSCP00000007202 SMART SM00357 IPR011129 373 436 3.00e-18 Cold shock protein
ENSSSCP00000007202 SMART SM00357 IPR011129 543 605 2.50e-17 Cold shock protein
ENSSSCP00000007202 SMART SM00357 IPR011129 698 761 8.90e-19 Cold shock protein
ENSSSCP00000007202 SMART SM00357 IPR011129 81 144 9.70e-19 Cold shock protein
ENSSSCP00000007202 SUPERFAMILY SSF50249 IPR012340 204 276 0.00e-00 Nucleic acid-binding, OB-fold
ENSSSCP00000007202 SUPERFAMILY SSF50249 IPR012340 359 440 0.00e-00 Nucleic acid-binding, OB-fold
ENSSSCP00000007202 SUPERFAMILY SSF50249 IPR012340 532 605 0.00e-00 Nucleic acid-binding, OB-fold
ENSSSCP00000007202 SUPERFAMILY SSF50249 IPR012340 684 764 0.00e-00 Nucleic acid-binding, OB-fold
ENSSSCP00000007202 SUPERFAMILY SSF50249 IPR012340 71 147 0.00e-00 Nucleic acid-binding, OB-fold

Pfam Annotation
Protein Pfam ID E.value Name Description
ENSSSCP00000007202 PF00313 0 CSD 'Cold-shock' DNA-binding domain
ENSSSCP00000007202 PF14444 2.2e-15 S1-like S1-like
ENSSSCP00000007202 PF12901 3.9e-13 SUZ-C SUZ-C motif
ENSSSCP00000007202 PF11604 9.5e-08 CusF_Ec Copper binding periplasmic protein CusF

Gene Ontology Annotation
Protein Entry Name Space Description
ENSSSCP00000007202 GO:0006355 biological_process regulation of transcription, DNA-templated
ENSSSCP00000007202 GO:0070966 biological_process nuclear-transcribed mRNA catabolic process, no-go decay
ENSSSCP00000007202 GO:0005737 cellular_component cytoplasm
ENSSSCP00000007202 GO:0070937 cellular_component CRD-mediated mRNA stability complex
ENSSSCP00000007202 GO:0003677 molecular_function DNA binding
ENSSSCP00000007202 GO:0003723 molecular_function RNA binding

Orthologs
TAXID Organism Gene ID TAXID Organism Gene ID
13616 Monodelphis domestica 100009761 400682 Amphimedon queenslandica 100631963
59463 Myotis lucifugus 102429010 10090 Mus musculus 229663
7070 Tribolium castaneum 655517 9615 Canis familiaris ENSCAFG00000009618
9358 Choloepus hoffmanni ENSCHOG00000000918 51511 Ciona savignyi ENSCSAVG00000008100
9796 Equus caballus ENSECAG00000020885 9365 Erinaceus europaeus ENSEEUG00000006286
9371 Echinops telfairi ENSETEG00000006280 9785 Loxodonta africana ENSLAFG00000007150
9669 Mustela putorius furo ENSMPUG00000005753 9978 Ochotona princeps ENSOPRG00000005002
8090 Oryzias latipes ENSORLG00000000707 13735 Pelodiscus sinensis ENSPSIG00000003823
42254 Sorex araneus ENSSARG00000000738 7425 Nasonia vitripennis 100123206
61853 Nomascus leucogenys 100590871 8128 Oreochromis niloticus 100701469
34638 Metaseiulus occidentalis 100908518 9597 Pan paniscus 100968628
9555 Papio anubis 101024024 39432 Saimiri boliviensis 101034862
9595 Gorilla gorilla 101146917 9606 Homo sapiens 7812
9646 Ailuropoda melanoleuca ENSAMEG00000017129 7719 Ciona intestinalis ENSCING00000014465
9483 Callithrix jacchus ENSCJAG00000012565 9361 Dasypus novemcinctus ENSDNOG00000010287
10020 Dipodomys ordii ENSDORG00000011609 9685 Felis catus ENSFCAG00000029266
69293 Gasterosteus aculeatus ENSGACG00000004544 9031 Gallus gallus ENSGALG00000002139
8049 Gadus morhua ENSGMOG00000012731 9315 Macropus eugenii ENSMEUG00000002677
9103 Meleagris gallopavo ENSMGAG00000016381 9258 Ornithorhynchus anatinus ENSOANG00000003346
9813 Procavia capensis ENSPCAG00000014368 9601 Pongo abelii ENSPPYG00000000996
132908 Pteropus vampyrus ENSPVAG00000008225 59729 Taeniopygia guttata ENSTGUG00000000972
31033 Takifugu rubripes ENSTRUG00000007996 9739 Tursiops truncatus ENSTTRG00000015583
30538 Vicugna pacos ENSVPAG00000000749 8083 Xiphophorus maculatus ENSXMAG00000009080
99883 Tetraodon nigroviridis ENSTNIG00000010878 9478 Tarsius syrichta ENSTSYG00000003747