Basic Information
Gene ID 499593 ; Check Expression Profles ; Check TFs & Targets Binding
Gene Name Sox2; rCG_41622
Full Name RCG41622
Organism Rattus norvegicus [10116]

Cross Reference
UniProt D4A543 UniGene Rn.17369
PDB NULL OMIM NULL
KEGG rno:499593 UCSC RGD:1565646

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING NULL

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
ENSRNOP00000016236 Gene3D G3DSA:1.10.30.10 IPR009071 42 121 1.00e-40 High mobility group box domain
ENSRNOP00000016236 Pfam PF00505 IPR009071 43 111 9.60e-27 High mobility group box domain
ENSRNOP00000016236 Pfam PF12336 IPR022097 112 202 4.80e-30 Transcription factor SOX
ENSRNOP00000016236 ProSiteProfiles PS50118 IPR009071 43 111 0.00e-00 High mobility group box domain
ENSRNOP00000016236 SMART SM00398 IPR009071 42 112 6.10e-31 High mobility group box domain
ENSRNOP00000016236 SUPERFAMILY SSF47095 IPR009071 34 115 0.00e-00 High mobility group box domain

Pfam Annotation
Protein Pfam ID E.value Name Description
ENSRNOP00000016236 PF12336 4.8e-30 SOXp SOX transcription factor
ENSRNOP00000016236 PF00505 6e-27 HMG_box HMG (high mobility group) box
ENSRNOP00000016236 PF09011 1.4e-11 HMG_box_2 HMG-box domain

Gene Ontology Annotation
Protein Entry Name Space Description
ENSRNOP00000016236 GO:0006351 biological_process transcription, DNA-templated
ENSRNOP00000016236 GO:0006355 biological_process regulation of transcription, DNA-templated
ENSRNOP00000016236 GO:0007275 biological_process multicellular organismal development
ENSRNOP00000016236 GO:0005634 cellular_component nucleus
ENSRNOP00000016236 GO:0003677 molecular_function DNA binding
ENSRNOP00000016236 GO:0043565 molecular_function sequence-specific DNA binding

Orthologs
TAXID Organism Gene ID TAXID Organism Gene ID
6087 Hydra magnipapillata 100205840 10224 Saccoglossus kowalevskii 100303496
9601 Pongo abelii 100460719 400682 Amphimedon queenslandica 100632156
30195 Bombus terrestris 100643013 10029 Cricetulus griseus 100759815
34638 Metaseiulus occidentalis 100898556 9555 Papio anubis 101022620
39432 Saimiri boliviensis 101037370 13735 Pelodiscus sinensis 102443720
7668 Strongylocentrotus purpuratus 373202 9031 Gallus gallus 396105
8364 Xenopus tropicalis 407873 9615 Canis familiaris 488092
7029 Acyrthosiphon pisum 100164548 7425 Nasonia vitripennis 100678051
8128 Oreochromis niloticus 100695175 132113 Bombus impatiens 100742000
7463 Apis florea 100866912 30611 Otolemur garnettii 100963354
31033 Takifugu rubripes 101073272 8090 Oryzias latipes 101162114
8083 Xiphophorus maculatus 102226408 7897 Latimeria chalumnae 102366157
7227 Drosophila melanogaster 39567 7955 Danio rerio 436756
9598 Pan troglodytes 460869 9913 Bos taurus 618135
7719 Ciona intestinalis ENSCING00000006005 10141 Cavia porcellus ENSCPOG00000008309
9361 Dasypus novemcinctus ENSDNOG00000019903 9595 Gorilla gorilla ENSGGOG00000027572
9258 Ornithorhynchus anatinus ENSOANG00000004458 9986 Oryctolagus cuniculus ENSOCUG00000011135
9813 Procavia capensis ENSPCAG00000003690 42254 Sorex araneus ENSSARG00000006102
43179 Ictidomys tridecemlineatus ENSSTOG00000011011 99883 Tetraodon nigroviridis ENSTNIG00000003970
9478 Tarsius syrichta ENSTSYG00000001164 9739 Tursiops truncatus ENSTTRG00000004853
7070 Tribolium castaneum 663351 9606 Homo sapiens 6657
9544 Macaca mulatta 696412 9646 Ailuropoda melanoleuca ENSAMEG00000011029
9483 Callithrix jacchus ENSCJAG00000008401 10020 Dipodomys ordii ENSDORG00000007481
9796 Equus caballus ENSECAG00000010653 9371 Echinops telfairi ENSETEG00000006366
9685 Felis catus ENSFCAG00000029205 69293 Gasterosteus aculeatus ENSGACG00000006100
8049 Gadus morhua ENSGMOG00000019777 9785 Loxodonta africana ENSLAFG00000030155
59463 Myotis lucifugus ENSMLUG00000013015 13616 Monodelphis domestica ENSMODG00000021292
7757 Petromyzon marinus ENSPMAG00000009737 9305 Sarcophilus harrisii ENSSHAG00000007719
9823 Sus scrofa ENSSSCG00000011771 30538 Vicugna pacos ENSVPAG00000010334

Paralogs
300954