Basic Information | |||
Gene ID | 499593 ; Check Expression Profles ; Check TFs & Targets Binding | ||
Gene Name | Sox2; rCG_41622 | ||
Full Name | RCG41622 | ||
Organism | Rattus norvegicus [10116] |
Cross Reference | |||
UniProt | D4A543 | UniGene | Rn.17369 |
PDB | NULL | OMIM | NULL |
KEGG | rno:499593 | UCSC | RGD:1565646 |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | NULL |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
ENSRNOP00000016236 | Gene3D | G3DSA:1.10.30.10 | IPR009071 | 42 | 121 | 1.00e-40 | High mobility group box domain |
ENSRNOP00000016236 | Pfam | PF00505 | IPR009071 | 43 | 111 | 9.60e-27 | High mobility group box domain |
ENSRNOP00000016236 | Pfam | PF12336 | IPR022097 | 112 | 202 | 4.80e-30 | Transcription factor SOX |
ENSRNOP00000016236 | ProSiteProfiles | PS50118 | IPR009071 | 43 | 111 | 0.00e-00 | High mobility group box domain |
ENSRNOP00000016236 | SMART | SM00398 | IPR009071 | 42 | 112 | 6.10e-31 | High mobility group box domain |
ENSRNOP00000016236 | SUPERFAMILY | SSF47095 | IPR009071 | 34 | 115 | 0.00e-00 | High mobility group box domain |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
ENSRNOP00000016236 | PF12336 | 4.8e-30 | SOXp | SOX transcription factor |
ENSRNOP00000016236 | PF00505 | 6e-27 | HMG_box | HMG (high mobility group) box |
ENSRNOP00000016236 | PF09011 | 1.4e-11 | HMG_box_2 | HMG-box domain |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
ENSRNOP00000016236 | GO:0006351 | biological_process | transcription, DNA-templated |
ENSRNOP00000016236 | GO:0006355 | biological_process | regulation of transcription, DNA-templated |
ENSRNOP00000016236 | GO:0007275 | biological_process | multicellular organismal development |
ENSRNOP00000016236 | GO:0005634 | cellular_component | nucleus |
ENSRNOP00000016236 | GO:0003677 | molecular_function | DNA binding |
ENSRNOP00000016236 | GO:0043565 | molecular_function | sequence-specific DNA binding |
Orthologs | |||||
TAXID | Organism | Gene ID | TAXID | Organism | Gene ID |
6087 | Hydra magnipapillata | 100205840 | 10224 | Saccoglossus kowalevskii | 100303496 |
9601 | Pongo abelii | 100460719 | 400682 | Amphimedon queenslandica | 100632156 |
30195 | Bombus terrestris | 100643013 | 10029 | Cricetulus griseus | 100759815 |
34638 | Metaseiulus occidentalis | 100898556 | 9555 | Papio anubis | 101022620 |
39432 | Saimiri boliviensis | 101037370 | 13735 | Pelodiscus sinensis | 102443720 |
7668 | Strongylocentrotus purpuratus | 373202 | 9031 | Gallus gallus | 396105 |
8364 | Xenopus tropicalis | 407873 | 9615 | Canis familiaris | 488092 |
7029 | Acyrthosiphon pisum | 100164548 | 7425 | Nasonia vitripennis | 100678051 |
8128 | Oreochromis niloticus | 100695175 | 132113 | Bombus impatiens | 100742000 |
7463 | Apis florea | 100866912 | 30611 | Otolemur garnettii | 100963354 |
31033 | Takifugu rubripes | 101073272 | 8090 | Oryzias latipes | 101162114 |
8083 | Xiphophorus maculatus | 102226408 | 7897 | Latimeria chalumnae | 102366157 |
7227 | Drosophila melanogaster | 39567 | 7955 | Danio rerio | 436756 |
9598 | Pan troglodytes | 460869 | 9913 | Bos taurus | 618135 |
7719 | Ciona intestinalis | ENSCING00000006005 | 10141 | Cavia porcellus | ENSCPOG00000008309 |
9361 | Dasypus novemcinctus | ENSDNOG00000019903 | 9595 | Gorilla gorilla | ENSGGOG00000027572 |
9258 | Ornithorhynchus anatinus | ENSOANG00000004458 | 9986 | Oryctolagus cuniculus | ENSOCUG00000011135 |
9813 | Procavia capensis | ENSPCAG00000003690 | 42254 | Sorex araneus | ENSSARG00000006102 |
43179 | Ictidomys tridecemlineatus | ENSSTOG00000011011 | 99883 | Tetraodon nigroviridis | ENSTNIG00000003970 |
9478 | Tarsius syrichta | ENSTSYG00000001164 | 9739 | Tursiops truncatus | ENSTTRG00000004853 |
7070 | Tribolium castaneum | 663351 | 9606 | Homo sapiens | 6657 |
9544 | Macaca mulatta | 696412 | 9646 | Ailuropoda melanoleuca | ENSAMEG00000011029 |
9483 | Callithrix jacchus | ENSCJAG00000008401 | 10020 | Dipodomys ordii | ENSDORG00000007481 |
9796 | Equus caballus | ENSECAG00000010653 | 9371 | Echinops telfairi | ENSETEG00000006366 |
9685 | Felis catus | ENSFCAG00000029205 | 69293 | Gasterosteus aculeatus | ENSGACG00000006100 |
8049 | Gadus morhua | ENSGMOG00000019777 | 9785 | Loxodonta africana | ENSLAFG00000030155 |
59463 | Myotis lucifugus | ENSMLUG00000013015 | 13616 | Monodelphis domestica | ENSMODG00000021292 |
7757 | Petromyzon marinus | ENSPMAG00000009737 | 9305 | Sarcophilus harrisii | ENSSHAG00000007719 |
9823 | Sus scrofa | ENSSSCG00000011771 | 30538 | Vicugna pacos | ENSVPAG00000010334 |
Paralogs | |||
300954 |